Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0538 ATGTCGCTTCGACCAAATGCAAGAACCGATGCTCGCCGTAACCGCTACAAGGTCGCCGTCGACGCCATCGATGGTCGCCGGAGACGTGAAGACAACATGATCGAGATTCGCAAGAGCAAACGTGAAGAAAGCTTGCAGAAGAAGCGTCGCGAAGGCCTTCCATCTCAGGAGCAGTTGCCCACTCCTTATTCAATCGACAAGAAGCTAAAGAGTCTTCCTTCAATGGTTGCCGGCGTCTGTTCTGACGACCGTGATGCTCAACTGGAAGCTACCATACTGTTTCGGAAGCTACTTTCAATTGAACGGAATCCTCCGATTGATACGGTTATTAAATCTGGTGCTATGCCGCGTTTGGTTGAGTTTCTTGCCAGGGAGGATTGCCCTCAACTCCAGTTTGAGGCTGCATGGACTCTGACAAACATAGCATCTGGAACTCCTGAGAACACTAAAGTGGTGGTTGATCACGGAGCAGTTCCTGCATTTGTTGCGTTGCTTAGTTCACCTATTGAGGAAGTTCGAGAGCAGGCGGTGTGGGCTTTGGGAAATATTTCTGGTGACTCCTCCTGGCATCGCGATCTAGTGCTTGATCATGGTGCTCTTATCTCACTATTAGCCCAGATGAACGAGCACGCCAAACTTTCAATGCTGAGAAATGCCACATGGTGTTTATCAAACTTTTGTAGGGGAAAGCCACAACCTCCATTTGAGATGGTGAGACATGCGCTTCCAATTCTTGGGCGTTTGGTTTTGTCGGATGATGAAGAAATTTTGTCAGATGCTTGCTGGGCTTTATCATACCTTTCTGATGAGTCAAATGAAAAAATACAAGACGTTATTGACGCAGGTGTATCTGGCCGACTGGTGCAGCTCCTTCAACACCCATCTACTTCAGTGTTGGTTCCTGTTGTTCGTACAGTGGGAAATATTGTGACTGGAGATGATATGCAAACTCAGGTGATGATCAATCACGGTGCACTCCCTTGCCTTTTGAACCTATTGTTACAACCTCTTAAAAAAACCATCAAGAAAGAAGCTTGTTGGGCTATATCCAACATTACAGCAGGAAATAAGGAACAAGTACAGGCTGTTTTTGAAGTCGGTCTTATTCCTCCGCTTGTGAGTCTTCTTCAAAATGCAGATTTTGACATAAAAAAAGAAGCTGCTTGGGCAACAACAAATGCTACAGCTGCTGGAAATCCTGAGCAGATCAAGTACCTGGTGGATCAAGGTTGCATAAAACCACTATGCGATATGCTTGTTTTCCCCGATCCTATAGTTATTGCGGTCTGTTTAGAGGGCCTAGAGAATATTTTGATTGCTGGAGAAGCAGAGAAGAGTCAAGGTGACTATGAAGATGCCAACTTGTATGCTCAGATGATAGAGGATTCTGAGGGATTGGAGAAGATTGAAAGCCTGCAGAATCACGACAACGATGAAATATATGAGAAGGCTGTTAAACTTCTTGAAACATACTGGTGTGAAGAGAAAGATGATATACTACCATCAGGCAATGGTTATCAATCTGGTTTCAACTTTGGAAGCAAAGAGCCTTCATTACCATCTGGTGGGTTCAACTTCGGTTGA 1584 0.4508 MSLRPNARTDARRNRYKVAVDAIDGRRRREDNMIEIRKSKREESLQKKRREGLPSQEQLPTPYSIDKKLKSLPSMVAGVCSDDRDAQLEATILFRKLLSIERNPPIDTVIKSGAMPRLVEFLAREDCPQLQFEAAWTLTNIASGTPENTKVVVDHGAVPAFVALLSSPIEEVREQAVWALGNISGDSSWHRDLVLDHGALISLLAQMNEHAKLSMLRNATWCLSNFCRGKPQPPFEMVRHALPILGRLVLSDDEEILSDACWALSYLSDESNEKIQDVIDAGVSGRLVQLLQHPSTSVLVPVVRTVGNIVTGDDMQTQVMINHGALPCLLNLLLQPLKKTIKKEACWAISNITAGNKEQVQAVFEVGLIPPLVSLLQNADFDIKKEAAWATTNATAAGNPEQIKYLVDQGCIKPLCDMLVFPDPIVIAVCLEGLENILIAGEAEKSQGDYEDANLYAQMIEDSEGLEKIESLQNHDNDEIYEKAVKLLETYWCEEKDDILPSGNGYQSGFNFGSKEPSLPSGGFNFG* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0538 527 Gene3D - 70 493 IPR011989 -
Psa4g0538 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Psa4g0538 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 367 IPR000225 GO:0005515
Psa4g0538 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 156 IPR000225 GO:0005515
Psa4g0538 527 MobiDBLite consensus disorder prediction 37 54 - -
Psa4g0538 527 Pfam Atypical Arm repeat 454 498 IPR032413 -
Psa4g0538 527 SMART arm_5 186 228 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 356 396 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 399 439 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 313 354 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 230 269 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 145 185 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 102 143 IPR000225 GO:0005515
Psa4g0538 527 SMART arm_5 271 311 IPR000225 GO:0005515
Psa4g0538 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 395 IPR000225 GO:0005515
Psa4g0538 527 PIRSF Importin_alpha 2 526 IPR024931 GO:0005737|GO:0006606|GO:0061608
Psa4g0538 527 MobiDBLite consensus disorder prediction 37 62 - -
Psa4g0538 527 PANTHER IMPORTIN ALPHA 2 518 - -
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 356 395 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 237 268 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 145 184 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 103 143 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 314 354 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 271 310 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 190 228 IPR000225 GO:0005515
Psa4g0538 527 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Psa4g0538 527 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Psa4g0538 527 SUPERFAMILY ARM repeat 5 496 IPR016024 -
Psa4g0538 527 Gene3D - 10 50 IPR036975 GO:0006606
Psa4g0538 527 PANTHER IMPORTIN SUBUNIT ALPHA 2 518 - -
Psa4g0538 527 Pfam Importin beta binding domain 12 91 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0538 Psa-Chr4 33599620 33602758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0538 128 388 U-box Gene Family AT3G46510 22.989 3.26e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0538 K15042 - gmx:100780020 780.015