Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0530 ATGGAAAGTAACTTATCGGCTCAACAATTAGTTGGATCAGATATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAGGCAAGAACAAGGTGGCTTCGCCCCAATGAGATTCATGCCATGCTTTGTAATCGCAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGTAAGATGCTTCGGAACTTTAGAAAAGATGGACACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAGGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGTCAAGATAACCCAAACTTTGTCCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTAGTTCATTACCGTGAAACACGTGAGTTTCAAGGCTCTCCCATCACTCCCGTAAATTCAAACTCTACTTCTGCCTCTGACCCAACTGCACCATTGATTTTGTCGGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGTGATATTAATAACAATATAACAGCCAAAAGTCACGAACTGAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTAGTTGTTGGGAACGATCTTAACGCCTCAACTGTACCTAATGGAGGAAAAATTCCATATTTTGATCAACAAAATCAGATTTTACAGAATGAAAGTTTTAGCAATGCAGGCAGCAATGCATCTACAGAAGTTCGTTCTTTCAATATTTCAACTCAGCCAATTCCAGGGAGCTACAGTGTTCCATTCAATTTTCCAGAAAGTGCTACTCTTCAGACAATTGACAATCAAGGAAATCAAAATGAGCCGAGGAACCATCATGTCCCTTCAAGTGGCGTTGATTCATTAAACACTTTGGTCAATGACAGATTGCCTATCTCTTCAATTGGTGTTGATTCCTTAAACACTTTGATCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGCGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGGTTCGGCTCTTGGATCCTCAATTTCAACCGTTGACAAATCGTATTCATCTTTAGTAGTGGAAAATCAGCAACCTTCCCTTCCAGAACAAATATTTAATCTCACCGATGTGTTCCCTGCATGGGTGTCTTCCACAGAGAAATCAAAGGTTTCCCTTTCCTTTGTTTGTGTATCTACGTACTAG 1248 0.4014 MESNLSAQQLVGSDIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNRKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETREFQGSPITPVNSNSTSASDPTAPLILSEEIDSGTKTAYAGDINNNITAKSHELRLHELNTLEWDELVVGNDLNASTVPNGGKIPYFDQQNQILQNESFSNAGSNASTEVRSFNISTQPIPGSYSVPFNFPESATLQTIDNQGNQNEPRNHHVPSSGVDSLNTLVNDRLPISSIGVDSLNTLINDRLQSQDSFGMWANQIMSDSPCSVDGSALGSSISTVDKSYSSLVVENQQPSLPEQIFNLTDVFPAWVSSTEKSKVSLSFVCVSTY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0530 415 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Psa4g0530 415 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 316 407 - -
Psa4g0530 415 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 315 - -
Psa4g0530 415 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 315 - -
Psa4g0530 415 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 316 407 - -
Psa4g0530 415 SMART CG_1_2 29 147 IPR005559 GO:0003677
Psa4g0530 415 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0530 Psa-Chr4 32624656 32630496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0530 3 405 CAMTA Transcription Factor Family AT4G16150 50.244 1.53e-118 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0530 K21596 - gmx:100793970 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0530 4 32624656 32630496 Psa4g0530 4 32624656 32630496 ECH