Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0525 ATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAAAGCCTTGATGTCTTCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGGGAATTCTCCTTAAAGACGTCATTTATTTCCAATACTTGGCAATACTTAATGGAGTCAACTTTAGATAACAAAATTCCATTTTCGCAAGCAAAAGATGCCATGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCGGAAAAAATTGTTTTAGGATGTAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGGATATACATGGGCGGTTACTTTATTTTCATGGTCAGGCTTGTCGCTTGATTTCCGAGACAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATCATGGAAGGGAGAAAATGGTTGCAGCTTTATTGTCAGTTGGGGCGAAACCATATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATATACTGCCGCTGATCTTGCTCACACGAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTTTCTAGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATACCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCAAGAACCTTACTGAGGAGGAGCTCTACCTGAAAGATGCATTGGCAGCTTACCGGACAGCCGCAGATGCAGCTGCGCGCATACAACAAGCATATAGGAAACATTCCTTAAAGTTACAAATGGTTGCAGCAATGAAGATTCAGCGTGCCTTCCGTAATTTTGAGACAAAGAAAGTCATGGCTTCTGCAGAAACTGAGGGAGATCAGAATCAGCAAAGTTATGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGATCGTTGGTGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGCTTAATACTGCAGAAACTGAGGGAGATCAGAATCAGCAAAGTTATGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGATCGTTGGCGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGCTTAATACTGCAGAAACTGAGGGAGTTCAGAATCAGCAAAGTGATGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGATCGCGTTGGGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAATGCGAGAAGATTACAGGAGTATGAAGTTGGCACTTAATCAAGCAAAGATGGAACGGGAATATGAAAAGGTGATTAGTACTGAAGTTGACATGGGATTGAAGAGATAG 1332 0.4174 MRLAYLLFAKQQSLDVFSSKVSSSRLKEAREFSLKTSFISNTWQYLMESTLDNKIPFSQAKDAMFGIALKNRLKEWLSEKIVLGCKTTEYDAQGQSVIHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYHGREKMVAALLSVGAKPYLVTDPTHQNPGGYTAADLAHTRGYHGLAAYLSEKFLVEQFNDMSLAGNTSGSLETSTDDPVNSKNLTEEELYLKDALAAYRTAADAAARIQQAYRKHSLKLQMVAAMKIQRAFRNFETKKVMASAETEGDQNQQSYAEEEFFKTGRKQAEDRWCLKRKGFRGLQLNTAETEGDQNQQSYAEEEFFKTGRKQAEDRWRLKRKGFRGLQLNTAETEGVQNQQSDAEEEFFKTGRKQAEDRVGRSVIRVQAMFRSKKMREDYRSMKLALNQAKMEREYEKVISTEVDMGLKR* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0525 443 ProSiteProfiles Ankyrin repeat region circular profile. 126 151 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 279 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 306 349 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 349 443 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 280 306 - -
Psa4g0525 443 SUPERFAMILY Ankyrin repeat 68 188 IPR036770 -
Psa4g0525 443 SMART ANK_2a 126 155 IPR002110 GO:0005515
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 306 349 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 349 443 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 280 306 - -
Psa4g0525 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 279 - -
Psa4g0525 443 Pfam Ankyrin repeats (3 copies) 84 153 IPR002110 GO:0005515
Psa4g0525 443 Gene3D - 58 192 IPR036770 -
Psa4g0525 443 ProSiteProfiles IQ motif profile. 395 422 IPR000048 GO:0005515
Psa4g0525 443 Coils Coil 406 426 - -
Psa4g0525 443 ProSiteProfiles Ankyrin repeat profile. 126 158 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0525 Psa-Chr4 32542385 32556009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0525 1 426 CAMTA Transcription Factor Family AT3G16940 49.548 2.36e-122 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0525 K21596 - gmx:100793970 538.495