Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0523 TATTTTACAGTTGTTTCTAAGCTTTCTAGGTTCCTTCACTTCTTGCAGATCCTAGTGACTGGACTCTTTCAAATAGACTATCTACACATCTCAAAGTCCAATCTAACATGTGTCTGTGGTGATGAAGTCGTTCCTGCAGAAATTGTTCAGGATGGGGTATATCGATGTTGGGTACCACCGCATTCTCCGGGATTAGTGAATCTCTACTTGAGCTTAGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGCACTCCTGTTTTGCACGCTCCAGTTGCTTCTGTGGAAGAAAAGAACAACTGGGACGAGTTTCAACTTCAGATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAAAGCCTTGATGTCTTCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGGGAATTCTCCTTAAAGACGTCATTTATTTCCAATACTTGGCAATACTTAATGGAGTCAACTTTAGATAACAAAATTCCATTTTCCCAAGCAAAAGATGCCCTGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCGGAAAAAATTGTTTTAGGATGTAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCCTCCATTTGTGTGCAATTTTGGGATATACATGGGCGGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTCCGGGACAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATTATGGAAGTGAGAAAATGGTTGCAACTTTATTGTCAGTTGGGGCGAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATATACTGCCGCTGATCTTGCTCACACGAGGGGTTATCACGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGGTCAATGACATGAGCTTAGCTGGAAATACCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACTGAGGAGCAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCCGCTGATGCAGCTGCACGCATACAACAAGCATATAGGGAACATTCCTTAAAGTTACAAACGGAGGCGGTTGAGTTTTCCAGCCCAGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCCTGCCTTTCGTAATTTTGAGACAAAGAATGTCATGGCTGCTGCTGCTCGCATACAATATAGATTCCGTACATGGAAGATTCGTAAAGATTTCCTTAACATGCGCCGTCAAGTTATCAAGATTCAAGCTGCTTTCCGGGGCTTTCAAATACGGAAACAGTATCGTAAAATTCTTTGGTCAGTTGGTGTGCTTGAGAAAGCAATTCTACATTGGCGTATAAAAGACTTCCGTGGGCTCCAGCTTAATACTGCAGAAGTAGAGGGAGATCAGAATCAGCAAAGTGATGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGATCGCGTTGAGAGAGGTGTAATACTAGTGCAGGCTATGTTCCGTTCTAAGAAAATGCAAGAAGATTACAGGAGGATGAAGTTGGCACTTAATCAAGCAAAGATGGAACGGGAAAATGAAAAGGTGATTAGTACTGAAGTTGACATGAGAATGAAGAGATAG 1656 0.4209 YFTVVSKLSRFLHFLQILVTGLFQIDYLHISKSNLTCVCGDEVVPAEIVQDGVYRCWVPPHSPGLVNLYLSLDGHNPISQVVNFEYRTPVLHAPVASVEEKNNWDEFQLQMRLAYLLFAKQQSLDVFSSKVSSSRLKEAREFSLKTSFISNTWQYLMESTLDNKIPFSQAKDALFGIALKNRLKEWLSEKIVLGCKTTEYDAQGQSVLHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGSEKMVATLLSVGAKPNLVTDPTHQNPGGYTAADLAHTRGYHGLAAYLSEKSLVEQVNDMSLAGNTSGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQQAYREHSLKLQTEAVEFSSPEAEARKIVAAMKIQPAFRNFETKNVMAAAARIQYRFRTWKIRKDFLNMRRQVIKIQAAFRGFQIRKQYRKILWSVGVLEKAILHWRIKDFRGLQLNTAEVEGDQNQQSDAEEEFFKTGRKQAEDRVERGVILVQAMFRSKKMQEDYRRMKLALNQAKMERENEKVISTEVDMRMKR* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0523 551 SMART iq_5 422 444 IPR000048 GO:0005515
Psa4g0523 551 SMART iq_5 399 421 IPR000048 GO:0005515
Psa4g0523 551 SMART iq_5 500 522 IPR000048 GO:0005515
Psa4g0523 551 Gene3D - 399 447 - -
Psa4g0523 551 SUPERFAMILY E set domains 17 87 IPR014756 -
Psa4g0523 551 SUPERFAMILY Ankyrin repeat 177 298 IPR036770 -
Psa4g0523 551 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
Psa4g0523 551 SMART ANK_2a 236 265 IPR002110 GO:0005515
Psa4g0523 551 Gene3D Immunoglobulins 15 90 IPR013783 -
Psa4g0523 551 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 551 - -
Psa4g0523 551 ProSiteProfiles IQ motif profile. 502 530 IPR000048 GO:0005515
Psa4g0523 551 ProSiteProfiles IQ motif profile. 401 429 IPR000048 GO:0005515
Psa4g0523 551 Gene3D - 167 307 IPR036770 -
Psa4g0523 551 Coils Coil 514 534 - -
Psa4g0523 551 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 551 - -
Psa4g0523 551 Pfam IPT/TIG domain 19 86 IPR002909 -
Psa4g0523 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 450 IPR027417 -
Psa4g0523 551 ProSiteProfiles Ankyrin repeat region circular profile. 236 264 - -
Psa4g0523 551 ProSiteProfiles IQ motif profile. 423 447 IPR000048 GO:0005515
Psa4g0523 551 Pfam Ankyrin repeats (3 copies) 194 265 IPR002110 GO:0005515
Psa4g0523 551 Pfam IQ calmodulin-binding motif 425 444 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0523 Psa-Chr4 32526801 32529394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0523 16 534 CAMTA Transcription Factor Family AT3G16940 58.126 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0523 K21596 - gmx:100793970 819.69