Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0522 ATGGTCAATAACACTTTGGTCAATGACAGATTTCCTGTCTCTTCAATTGGTGTTGATTCCTTAAACACTTTGATCAATAACAGATTTCAAAGTCAGGACAGCTTTGGAAAGTGGGCGAACCAAATCATGTCTGAATCCCTTTCTTCAGTTGATGGTTCGGCTCTCGTATCCTCAGTTTCATCCGGTCACAAATCCTATTCATCGTTGGTAGTTGAAAATCCGCAATTTTCCGTTCCAGAACAACTATTTAATCTCACCGATGTGTTCCCTGCATGGGTGTCTTCCACAGAGAAATCAAAGATCCTAGTGACTGGACTCTTTCAAATAGACTATCTACACATCTCAAAGTCCAATCTAGCATGTGTCTGTGGTGGTGAAGTCGTTCCTGCACAAATTGTTCAGGATGGGGTATATCGATGTTGGGTACCACCGCATTCTCCGGGAATCGTGGATCTCTACTTGAGCTTAGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGCACTCCTGTTTTGCACAATCCAGTTGCTTCTGTGGAAGAAAAGAACAACTGGGACGAGTTTCAACTTCAGATGAGGCTTGCTTATTTGCTTTTTGCTAAACAGCAAAGCCTTGATGTCTTCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGGGAATTCTCCTTAAAGACGTCATTTATTTCCAATACTTGGCAATACTTAATGGAGTCAACTTTAGATAACATTCCATTTTCCCAAGCAAAAGATGCCCTGTTTGGATATGCATTGAAAAACAGATTAAAGGAATGGCTTTCGGAAAAAATTGTTTTAGGATGTAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCCTCCATTTGTGTGCAATTTTGGGATATACATGGGCAGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTCCGGGACAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATTATGGAAGTGAGGAGAGAATGGTTGCAACTTTATTGTCAGTTGGGGCGAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATATACTGCCGCTGATCTTGCTCACACGAGGGGTTATCATGGCTTAGCAGGTTATCTTTCGGAAAAGTTTCTAGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATAGCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACTGAGGAGCAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCCGCTGATGCAGCTGCACGCATACATGAAGCATATAGGGAACATTCCTTAAAGTTACAAATGAAGGCGGTTGAGTTTTCCTGCCCAGAAGCTGAAGAACGCAAAATAGTTGCAGCAATGAAGATTCAGCGTGCCTTCCGTAATTTTGAAACAAAGAAAGTCATGGCTTCTGCTGCTCGCATACAATATAGATCCCGTACACGGAAGATTTGTAAAGATTTCCTTAACATGCGCAGTCAAGTTATCAAGATTCAAGCTGGTTTCCGGTGCTTTCAACAACGGAAACATTATCATAAAATTCTTTGGTCAGTTGGTGTGGTTGAGAAAGCAGTGCTTCGTTGGCGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGCTTAATACTGCAGAAACAGAGGGAGATCAGAATCAGCAAAGTGATGCAGAAGAGGAATTCTTTAAAACTGGTAGGAAACAAGCTGAAGATCGCGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAATGCGAGAAGATTACAGGAGTATGAAGTTGGCACTTAATCAAGCAAAGATGGAACGGGAGGTTGAAGCTGATTATGTATATCAAATGGAGTTTGTAAATTCCCTTCTTTAA 1917 0.4189 MVNNTLVNDRFPVSSIGVDSLNTLINNRFQSQDSFGKWANQIMSESLSSVDGSALVSSVSSGHKSYSSLVVENPQFSVPEQLFNLTDVFPAWVSSTEKSKILVTGLFQIDYLHISKSNLACVCGGEVVPAQIVQDGVYRCWVPPHSPGIVDLYLSLDGHNPISQVVNFEYRTPVLHNPVASVEEKNNWDEFQLQMRLAYLLFAKQQSLDVFSSKVSSSRLKEAREFSLKTSFISNTWQYLMESTLDNIPFSQAKDALFGYALKNRLKEWLSEKIVLGCKTTEYDAQGQSVLHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGSEERMVATLLSVGAKPNLVTDPTHQNPGGYTAADLAHTRGYHGLAGYLSEKFLVEQFNDMSLAGNSSGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIHEAYREHSLKLQMKAVEFSCPEAEERKIVAAMKIQRAFRNFETKKVMASAARIQYRSRTRKICKDFLNMRSQVIKIQAGFRCFQQRKHYHKILWSVGVVEKAVLRWRLKRKGFRGLQLNTAETEGDQNQQSDAEEEFFKTGRKQAEDRVERSVIRVQAMFRSKKMREDYRSMKLALNQAKMEREVEADYVYQMEFVNSLL* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0522 638 Coils Coil 600 620 - -
Psa4g0522 638 SUPERFAMILY Ankyrin repeat 259 382 IPR036770 -
Psa4g0522 638 ProSiteProfiles IQ motif profile. 507 531 IPR000048 GO:0005515
Psa4g0522 638 Gene3D - 250 386 IPR036770 -
Psa4g0522 638 ProSiteProfiles Ankyrin repeat region circular profile. 319 348 - -
Psa4g0522 638 ProSiteProfiles IQ motif profile. 588 616 IPR000048 GO:0005515
Psa4g0522 638 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 11 625 - -
Psa4g0522 638 Pfam Ankyrin repeats (3 copies) 277 349 IPR002110 GO:0005515
Psa4g0522 638 SMART iq_5 464 486 IPR000048 GO:0005515
Psa4g0522 638 SMART iq_5 586 608 IPR000048 GO:0005515
Psa4g0522 638 SMART iq_5 506 528 IPR000048 GO:0005515
Psa4g0522 638 Pfam IQ calmodulin-binding motif 511 528 IPR000048 GO:0005515
Psa4g0522 638 Gene3D Immunoglobulins 78 174 IPR013783 -
Psa4g0522 638 ProSiteProfiles Ankyrin repeat profile. 319 352 IPR002110 GO:0005515
Psa4g0522 638 Pfam IPT/TIG domain 85 170 IPR002909 -
Psa4g0522 638 SUPERFAMILY E set domains 84 171 IPR014756 -
Psa4g0522 638 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 11 625 - -
Psa4g0522 638 Gene3D - 481 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0522 Psa-Chr4 32518757 32521820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0522 14 620 CAMTA Transcription Factor Family AT3G16940 53.279 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0522 K21596 - gmx:100793970 880.167