Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0520 ATGATCATGGCGAGTTCTTCAGCATCGGCATTTTCTAATGACATTCCAAACAACAATATCCATAAAAGTTGCACAATTGATTTCCCTTTCTCACCTGCTTTACCATCATGCAACTTATTTGACATGTCTCCACTACCACCGTCATCACTATCCGATCATCATGATCAAAATGATGCTTCTTTTATTGCTGACATAGACATGTTGAGCTCAGATGATTTCAACACTTCTTGGTTCTCAGACTTCAACTTTGAAACCGACACATCAGAATCACTACCTGTTGCCACCCAAACTGGCGTACAACTGCCTCCTTTGCCGGTTTTGTCCCCCGCTGCAACATCTGAGGTTTTAAATAATAATGCGGTGACTCCTGCCCCGGGTTCCTTTTTGAATACTTCATCACCGAATGAGCCTGGTGTTATTGCAAACAAACCGGTTGTTGCCAGAGTTGAGAATGGAGATGGATGTGAATTTGTTGAAGGAAAAGAAGCTGAAGCCGAGGATCGCGGTGGAGATCGTCGAATTGTAACAGTGGAGAATCAAAAAGATCAAAATCAGACTAAGAACCCGTCGGTGAAACTAAAGAAGACGGACAAGAAGAAGCAAAAGCTGAATAGAGTTATTTTCAAGACACAAACTGAACTTGATCACTTGGATGATGGTTATAGGTGGCGCAAGTATGGCCAGAAGTCTGTCAAAAACAATCCTTTTCCCAGGAGATATTACCGTTGCACCACCCCTGGTTGTAAAGTGAAGAAGCATATAGAGCGTTTCGCGCTTGAGCCTTCCATGTTGCTAACCTCTTATGAAGGAAACCATACCCACCTAGCTCCAAAGGTGACGCGTGTTGCACGCCTTGAAATCATGCATGATGCTACTGCTGCTGGTGTCCAGAAAATCCACCATAAAATCAAAACTAATGGTATTTGTGTTGCTGGAAACAAACCTCCAATGTTGCAGCAGTTGCAACCACAACAGTTTCAGAATCAGAATGTGATTCCTCAGCAACCTGCATTGCCTCCATTGTTATACAATAATGGTTATAATAACTCCTTCAACGTCGCTCCAACTTCGAATGTTGTTAACCATGCTAACAACTTTCTACCTTTGAATGTTGTTCACTCTTTTGTTGCTAACAATTCTCCAACTTTGAATTTTGCTAACTCTGCTAACAACTTTCCACCTTTGAATGTTGTTAACCCCGCTGCTGCAGACAATTTTCCACCTCTGGATGTTGTTAACCCTGTTACTGCTGAAACTTCTCCACCTTTGAATGTGGTTAACTCTGCTAGCAATTTCTTCAACTCTTCGACATCATTTGGTGAATTCCTTCAAAACATAGGTGGGTGCAATTTTTCATTGTTGACAGATAATTTGATAAGCAACGATGGACTTCTTCAGGACATGATCATGCAAAGGGAGACAAGAGGAGCTTGGGCTGGAGCTGGAACAGGAAGATGA 1458 0.4218 MIMASSSASAFSNDIPNNNIHKSCTIDFPFSPALPSCNLFDMSPLPPSSLSDHHDQNDASFIADIDMLSSDDFNTSWFSDFNFETDTSESLPVATQTGVQLPPLPVLSPAATSEVLNNNAVTPAPGSFLNTSSPNEPGVIANKPVVARVENGDGCEFVEGKEAEAEDRGGDRRIVTVENQKDQNQTKNPSVKLKKTDKKKQKLNRVIFKTQTELDHLDDGYRWRKYGQKSVKNNPFPRRYYRCTTPGCKVKKHIERFALEPSMLLTSYEGNHTHLAPKVTRVARLEIMHDATAAGVQKIHHKIKTNGICVAGNKPPMLQQLQPQQFQNQNVIPQQPALPPLLYNNGYNNSFNVAPTSNVVNHANNFLPLNVVHSFVANNSPTLNFANSANNFPPLNVVNPAAADNFPPLDVVNPVTAETSPPLNVVNSASNFFNSSTSFGEFLQNIGGCNFSLLTDNLISNDGLLQDMIMQRETRGAWAGAGTGR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0520 485 Gene3D WRKY domain 204 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g0520 485 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 338 IPR044810 GO:0003700
Psa4g0520 485 SUPERFAMILY WRKY DNA-binding domain 210 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g0520 485 SMART WRKY_cls 217 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g0520 485 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 89 338 - -
Psa4g0520 485 ProSiteProfiles WRKY domain profile. 212 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g0520 485 Pfam WRKY DNA -binding domain 218 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0520 Psa-Chr4 32401543 32403821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0520 108 277 WRKY Transcription Factor Family AT4G18170 43.407 9.21e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa4g0520 WRKY 7.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0520 - - mtr:MTR_4g122530 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3688 1 310519245 310522209 Psa4g0520 4 32401543 32403821 PCT