Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0512 ATGAACTACAACCGTCGAAGTCCCGGCGGTTTCCGCTCCGCCCCCGCCCCTCTCCATCGGAATTTTGATAGTCCACAGCGTTGGTCTCCGGGTAGGGTTGGGGCCTTCCGTCCACCAGGTGCTGGAGAGGGGTTCAGGCCGATGGGAGGTGAAGGTCCTGGAGATTTTGGATTTAATAATCACCAGCCGCCGGTGATGTCTGGGCAGAAACGAGGGTTTCCTTTCTCTGGACGTGGAGCTTCACCGGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCGCGAACAGCAACTGAGGAAGATATTCGTCCTTTATTTGAGGAACACGGGAATGTGATTGAGGTCGCCCTGATCAAAGATAGAAAGACTGGACAACATCAAGGTTGTTGTTTTATAAAGTATGCTACTTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCCGGAGGTGTTGGTCCCATTCAAGTGCGGTATGCTGATGGCGAACGAGAACGCCTTGGCGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAATAAACAGGCTCTCGTAAAAGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATATTCTCACAGAGATATGGCACTGGCAGCTATTAATGGACTTAATGGAATATATACAATGAGAGGTTGTGATCAACCACTGATTGTTCGGTTTGCTGATCCTAAGAGACCTCGCCAAGGAGATTCCAGGGGTCCTGTATTTGGAGCTGCAGGATTTGGTCCTAGATTGGATGCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAATCCATCAACCAAATACTGGTACATCTTTCAATGCTGGTTTTCATGGTATGGGGCCTCCATCGATGCCAAGATCTGGCGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGAATGGCATGGGAGTCTCCCTAGATGTTCGATTTCAAGCTCAGTCTCCGTCAGCAATGCCACAACAGAATTTCAACCAGCCTCGATCACAAATTCCACCGGTCAATCAACAAATACCTCCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATGCCGTATCCTCAAAAATCGACACTTCCATCCCTCAGGCAACACGGTCAGCCACAACCTCTGTCTGCTGGTCCGCAGGGACTGGGCATTAATGCACAGTTTTCAGTTCCTCAACCTCAAGCTCAGAAGAGTGTTTTGTCTGCTGCGTTTCCTCAGACCTCTCTTGATACTAACATCCAATCTAATACAGCATTGACTACCCCAAGTCGACAGCAAATTCCTCCCTCTATGCAGCAGCAGCAGCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCCCAGTTGGTCTCACAACAAACACAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATCCAGCCATCCAGTCAAGCAATGACATTGCAGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGCGGGCCTGTATCACATGCAGCCACAGGCGCTCATGTGGCTGCACCTGCTGCCGGTACTCCTTCATCAACAGCTGCTACTTCTTCTGTACAGGCAATAAGCCAGAACACAACTCTTCCAAAATGTAATTGGACAGAGCATCTATCTCCTGAGGGCTTCAAATACTACTATAATAGTGTGACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATTGTTTGAACAACAAAAGCAACAGCACAGCCAGTCTGATCAGCAGTCTCAAAATCAGTCACAGCCTTCAATACCACCCACCCAACAAATTGCACAAAACCAACAGGTTAAGCCTCAAAGTCATTTCAGAGAACAAGTTCTCCACCATCAACAATTACAGCAACCTTCCTCTTTCCAGGCATATGGAGTTACAGGTCATCAAAGTGTTCAGGAACTTGGTTATAAACAGACGTCATTTGTTTCTGCTGGTGATCCTGGACGTTATTCACAGGGTATTAATACTGCGCAAGAGCTGATGTGGAAAAACAGACCTGCAGGAGTTTGA 2223 0.471 MNYNRRSPGGFRSAPAPLHRNFDSPQRWSPGRVGAFRPPGAGEGFRPMGGEGPGDFGFNNHQPPVMSGQKRGFPFSGRGASPDHFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQALVKEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPVFGAAGFGPRLDAPGTRLPSNNSDPMGDRMPPPNAWRPIHQPNTGTSFNAGFHGMGPPSMPRSGDMALPINAGGPMNGMGVSLDVRFQAQSPSAMPQQNFNQPRSQIPPVNQQIPPSQKPIQSSQEFPPSHQLYPQAPMPYPQKSTLPSLRQHGQPQPLSAGPQGLGINAQFSVPQPQAQKSVLSAAFPQTSLDTNIQSNTALTTPSRQQIPPSMQQQQQQPLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQAMTLQHHAEATKTQSQWGGPVSHAATGAHVAAPAAGTPSSTAATSSVQAISQNTTLPKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQHSQSDQQSQNQSQPSIPPTQQIAQNQQVKPQSHFREQVLHHQQLQQPSSFQAYGVTGHQSVQELGYKQTSFVSAGDPGRYSQGINTAQELMWKNRPAGV* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0512 740 PANTHER RNA BINDING PROTEIN 39 673 - -
Psa4g0512 740 MobiDBLite consensus disorder prediction 572 591 - -
Psa4g0512 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 172 IPR000504 GO:0003723
Psa4g0512 740 ProSiteProfiles WW/rsp5/WWP domain profile. 604 631 IPR001202 GO:0005515
Psa4g0512 740 SMART rrm1_1 92 168 IPR000504 GO:0003723
Psa4g0512 740 SMART rrm1_1 183 258 IPR000504 GO:0003723
Psa4g0512 740 CDD RRM2_FCA 183 262 IPR034645 -
Psa4g0512 740 CDD WW 601 631 IPR001202 GO:0005515
Psa4g0512 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 156 IPR000504 GO:0003723
Psa4g0512 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 250 IPR000504 GO:0003723
Psa4g0512 740 SUPERFAMILY RNA-binding domain, RBD 66 176 IPR035979 GO:0003676
Psa4g0512 740 Pfam WW domain 602 629 IPR001202 GO:0005515
Psa4g0512 740 MobiDBLite consensus disorder prediction 636 674 - -
Psa4g0512 740 MobiDBLite consensus disorder prediction 1 32 - -
Psa4g0512 740 MobiDBLite consensus disorder prediction 278 300 - -
Psa4g0512 740 MobiDBLite consensus disorder prediction 635 674 - -
Psa4g0512 740 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 39 673 - -
Psa4g0512 740 Gene3D - 180 270 IPR012677 -
Psa4g0512 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 262 IPR000504 GO:0003723
Psa4g0512 740 MobiDBLite consensus disorder prediction 477 503 - -
Psa4g0512 740 SUPERFAMILY WW domain 603 635 IPR036020 GO:0005515
Psa4g0512 740 SMART ww_5 599 631 IPR001202 GO:0005515
Psa4g0512 740 Gene3D - 585 656 - -
Psa4g0512 740 Gene3D - 86 179 IPR012677 -
Psa4g0512 740 SUPERFAMILY RNA-binding domain, RBD 182 277 IPR035979 GO:0003676
Psa4g0512 740 ProSitePatterns WW/rsp5/WWP domain signature. 604 629 IPR001202 GO:0005515
Psa4g0512 740 MobiDBLite consensus disorder prediction 542 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0512 Psa-Chr4 31982733 31999875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0512 89 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.510 3.06e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0512 - - gmx:100798390 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0512 4 31982733 31999875 Psa4g0512 4 31982733 31999875 ECH