Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0498 ATGATCACTGGTGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGGCAAGATGTGAGCTTCTTTGATAAAGAAACTAATGCTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTAAAGATGCCATGGGAGAAAAGGTGGGACAGTTCATACAGTTTGTGTCAACTTTCATAGGAGGTTTTGTCATAGCATTCACTAAGGGATGGCTTCTAACTGTTGTTATGCTATCTAGTATACCACTTCTTGTCTTGTCTGGTGCCATGACGGGTATGGTAATTGCAAAAGCATCATCGACTGGACAAGCAGCTTATTCTAAATCAGCAGGTGTAGTAGAGCAGACAATAGGTTCCATCCGAACTGTTGCATCATTCACCGGGGAGAAACAAGCTATAGCTAAGTATAATCAGTCCTTGATCAAGGCCTACAATACTTCAGTGCAAGAGGCACTAGCATCTGGTGTGGGATTTGGAGCACTCTTTTTTGTTTTTATCTGCAGTTATGCTTTGGCTGTATGGTTTGGTGGGAAATTGATAATCGAGAAAGGGTATACAGGAGGAGATGTTATGACTGTAATTTTTGCTGTATTAACTGGTTCAATGTGTCTTGGGCAGACGTCTCCAAGCTTAAGTGCTTTTGCGGCAGGACAAGCTGCAGCATTTAAGATGTTTGAAACGATTAAAAGGACTCCGGAAATTGATGCCTACGACACTACCGGGCGAAAGCTTGATGAAGTTCGTGGAGATATAGAACTCAGGGAGGTTTGTTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCATTACTCAGCGGAACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAAAGTGGTGAAATTCTTATTGATGGTGTCAACCTCAAAGAATTTCAACTAAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCGGTTCTCTTCACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATTGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCGGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGAGCAATTTTGAAAGATCCAAGAATATTACTTCTCGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCCTTGGACAGAATAATGGTAAACCGAACGACTGTTATTGTAGCTCATCGCTTAAGTACCATAAAGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAGAGAGGTTCTCATGTTGAGCTCATTAAAGATCCTAATGGAGCCTATAGCCAGCTTATTAGGCTGCAAGAAATGAAGGGATCAGAACAGATTCAAAATGATGCAAATGACACAAACAAGTCGAACAGTATTGTGCATTCTGGAAGATTATCAAGTCAAAGATCTTTTTCCTTAAGATCAATAAGCCAAGAGTCGCCTGGAAACAGCGATCGTCGCTCTTTCTCAACATCATATGTTGCGCCTACAACAGATGGCTTCTTAGAAAATGAAGATGGTGAACCTCAAGCTTCTCCTTCAAAAAAATCTTCACCCCCCGAAGTGCCACTATATCGCCTAGCATATTTTAACAAACCCGAGATTTCAGTCTTATTGATGGGAACTATAGCTGCAGTGCTCCATGGAGTTATAATGCCTGCTTTTGGGCTCTTACTTTCTAAAATGATTAGTATTTTCTACAAGCCAGCTGATGAACTTCGTCATGATTCAAAAATTTGGGCAATAGTGTTTGTAGCAGTTGCCGTGGCATCATTAGTCGTTATTCCATGTAGATTCTACTTTTTTGGTGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAAAACGTGTTTTGAGAAAGTTGTTCACATGGAAGTAAGTTGGTTTGATGAGGCTGATCATTCAAGTGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCATCAGTTAGAGCTCTTGTTGGGGATGCACTTGGTCTGCTGGTTCAAAATATTGCTACAGCAATAGCTGGCTTGGTTATTGCTTTTGGAGCGAGCTGGCAGCTCGCTTTCGTCGTCCTCGCTTTAGCGCCTCTATTAGGACTAAACGGATATGTGCAAATAAAGGTCTTGAAAGGATTCAGCGCAGATGCAAAGAAATTGTATGAGGAAGCAAGCCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTTCTTCTTTCTGTGCAGAAGAGAAAGTGATGGAACTATATCAGCAAAAATGTGACGGACCAATTAAGAAAGGCATACGACGAGGGATAATAAGTGGAATTGGTTTTGGGTTATCATTCTTCATGCTGTATGCAGTTTATGCATGCTGTTTTTACGCTGGAGCTCGACTTGTAGCGGATGGAAAATCTACATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTCAGCATGGCAGCTATGGGAGTCTCACAATCTGGGACATTGGCTCCTGATTCATCAAATGCAAAAAGTGCAGTTGCTTCCATATTTGCTATTCTTGACCAGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACGCTGGAAAATGTAAAGGGAGAAATTGAGTTTAAGCATGTCAGTTTCAAGTATCCTACTAGACCTGATGTTCAAATATTCACAGATCTTTGCTTGAACATTCATAGCGGGAAGACAGTTGCGCTGGTCGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGGTTTTACGACCCTGACTCAGGTCATATCACACTTGACGGAATAGAAATTCAAAGGATGCAAGTGAAATGGCTAAGACAACAAATGGGACTAGTAAGCCAAGAGCCTGTTCTTTTCAATGACACAGTTCGAGCCAATATTGCATACGGAAAAGGAGGAGACGCAAGGGAAGCAGAAATCATAGCTGCTGCAGAATTGGCAAATGCTCACCAGTTCATCAGTAGTTTGCAGAAGGGTTACGACACGATAGTAGGCGAGAGAGGAGTTCAGTTATCCGGGGGACAGAAGCAGCGCGTGGCAATTGCGAGAGCCATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCGCTTGACCGCGTTATGGTGGAGCGGACGACAATAATAGTTGCTCACAGGTTATCGACTATAAAGGGTGCAGATATAATAGCAGTAGTTAAGAATGGTGTGATAGCAGAGAAAGGAAGACATGAAACGTTGCTGCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACACACACATAGAAGTGCTTCTTCATCTTAG 3492 0.4181 MITGERQAARIRGLYLKTILRQDVSFFDKETNAGEVVGRMSGDTVLIKDAMGEKVGQFIQFVSTFIGGFVIAFTKGWLLTVVMLSSIPLLVLSGAMTGMVIAKASSTGQAAYSKSAGVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYNTSVQEALASGVGFGALFFVFICSYALAVWFGGKLIIEKGYTGGDVMTVIFAVLTGSMCLGQTSPSLSAFAAGQAAAFKMFETIKRTPEIDAYDTTGRKLDEVRGDIELREVCFSYPTRPDELIFNGFSLSLLSGTTAALVGQSGSGKSTVVSLIERFYDPQSGEILIDGVNLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIVERGSHVELIKDPNGAYSQLIRLQEMKGSEQIQNDANDTNKSNSIVHSGRLSSQRSFSLRSISQESPGNSDRRSFSTSYVAPTTDGFLENEDGEPQASPSKKSSPPEVPLYRLAYFNKPEISVLLMGTIAAVLHGVIMPAFGLLLSKMISIFYKPADELRHDSKIWAIVFVAVAVASLVVIPCRFYFFGVAGGKLIQRIRKTCFEKVVHMEVSWFDEADHSSGALGARLSTDAASVRALVGDALGLLVQNIATAIAGLVIAFGASWQLAFVVLALAPLLGLNGYVQIKVLKGFSADAKKLYEEASQVANDAVGSIRTVSSFCAEEKVMELYQQKCDGPIKKGIRRGIISGIGFGLSFFMLYAVYACCFYAGARLVADGKSTFSDVFLVFFALSMAAMGVSQSGTLAPDSSNAKSAVASIFAILDQKSQIDPSDESGMTLENVKGEIEFKHVSFKYPTRPDVQIFTDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQRMQVKWLRQQMGLVSQEPVLFNDTVRANIAYGKGGDAREAEIIAAAELANAHQFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADIIAVVKNGVIAEKGRHETLLHKGGDYASLVALHTHRSASSS* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0498 1163 Gene3D - 907 1161 IPR027417 -
Psa4g0498 1163 SMART AAA_5 284 485 IPR003593 -
Psa4g0498 1163 SMART AAA_5 944 1137 IPR003593 -
Psa4g0498 1163 Pfam ABC transporter transmembrane region 2 208 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g0498 1163 Pfam ABC transporter transmembrane region 595 867 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g0498 1163 Pfam ABC transporter 276 424 IPR003439 GO:0005524
Psa4g0498 1163 Pfam ABC transporter 937 1085 IPR003439 GO:0005524
Psa4g0498 1163 SUPERFAMILY ABC transporter transmembrane region 583 901 IPR036640 GO:0005524|GO:0016021
Psa4g0498 1163 MobiDBLite consensus disorder prediction 500 547 - -
Psa4g0498 1163 Gene3D ABC transporter type 1, transmembrane domain 1 891 IPR036640 GO:0005524|GO:0016021
Psa4g0498 1163 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 1158 - -
Psa4g0498 1163 ProSitePatterns ABC transporters family signature. 396 410 IPR017871 GO:0005524
Psa4g0498 1163 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 917 1154 IPR003439 GO:0005524
Psa4g0498 1163 SUPERFAMILY ABC transporter transmembrane region 2 241 IPR036640 GO:0005524|GO:0016021
Psa4g0498 1163 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 218 - -
Psa4g0498 1163 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 596 882 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g0498 1163 CDD ABC_6TM_Pgp_ABCB1_D2_like 585 900 - -
Psa4g0498 1163 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 257 493 IPR003439 GO:0005524
Psa4g0498 1163 PANTHER - 1 1158 - -
Psa4g0498 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1154 IPR027417 -
Psa4g0498 1163 ProSitePatterns ABC transporters family signature. 1057 1071 IPR017871 GO:0005524
Psa4g0498 1163 Gene3D - 255 515 IPR027417 -
Psa4g0498 1163 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g0498 1163 CDD ABC_MTABC3_MDL1_MDL2 917 1152 - -
Psa4g0498 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 495 IPR027417 -
Psa4g0498 1163 CDD ABC_MTABC3_MDL1_MDL2 257 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0498 Psa-Chr4 30139658 30145277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0498 559 1163 Calmodulin-binding Proteins AT2G36910 38.844 1.52e-131 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0498 4 30139658 30145277 Psa4g0498 4 30139658 30145277 ECH