Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0489 ATGCGTTTCATTGCCGGTTTCTTTGTTCTTGTTGTGTTTGGTTTGCTATCAGTTCTCTTTGGATTTGCCTTGGCGGAGAAAAGCGGTTTCGGCTACTGCTTATTTACGGATTACTGCTTGGGGTTGCTGAATAAGTTTCCACGGTGGCTATTAACTGTGAGCATTTGGGAAATAAGCCATGCTAGTTCTGCTGGTCTGGGTTGTTTTGCTTTTTACTATAATTGGGGAGTTCTTTATAGCAATCGGGTTTATCTTCTGGTTGACCAACTTTGGAACTGGCTTAACAATTGCAAGGATTGTGGCATGGTCTTATTTGCTCATGGCCTAGCTGGCAAGATCCTGGCTGGTATGGAGGACAATGCCTTCATGGGACTAGGACATGTTGGTCTTAACTCAGTGATTTTTCAGAATGGGTTATCCCTAGCTTCATGTCATGGCTCCATGGAGAATGATGGTTTAACCAGGGGTTGCAATACCGGGGGGAGATTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTTGAGCCAGGGTCAATTGTTTGCAATTTCGGCCTTGGAACTGTGTTCTTGCTGTTGCAGAGGGTCAAAAAAGTGCTGGTGCATCACGGGTTATTGGCATAGAGTATTGATAGCAACAAGTATGATACAGATAACTTGGAGTGGTAGTATTGATGAACCTTTGGAGGATGGGGATAGCGCTCTTCATTTGACCTGTTTGTACGGCCATTTTGGATGCGCACAGCTTCTACTAGAAAGAGGAGCTGATTTGGAGGCTAAAGATGAGGATGGAGCAATTCCTTTACACGATGCGTGTGCAGGAGGGTTTTTGGAGATAGTCCAACTTCTACTTAACAAAGCTAATGACGCCGAGCATATAAAAAGGATGTTAGAATCAGTCGATTCTGAGGGTGATACTGATGGGGTGGGGGAGTCGAATGTCTAG 942 0.4501 MRFIAGFFVLVVFGLLSVLFGFALAEKSGFGYCLFTDYCLGLLNKFPRWLLTVSIWEISHASSAGLGCFAFYYNWGVLYSNRVYLLVDQLWNWLNNCKDCGMVLFAHGLAGKILAGMEDNAFMGLGHVGLNSVIFQNGLSLASCHGSMENDGLTRGCNTGGRLALELSGTLQKLSQGQLFAISALELCSCCCRGSKKCWCITGYWHRVLIATSMIQITWSGSIDEPLEDGDSALHLTCLYGHFGCAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLLNKANDAEHIKRMLESVDSEGDTDGVGESNV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0489 313 Gene3D - 214 305 IPR036770 -
Psa4g0489 313 ProSiteProfiles Ankyrin repeat region circular profile. 229 261 - -
Psa4g0489 313 ProSiteProfiles Ankyrin repeat profile. 262 294 IPR002110 GO:0005515
Psa4g0489 313 ProSiteProfiles Ankyrin repeat region circular profile. 262 288 - -
Psa4g0489 313 PANTHER SOWAH (DROSOPHILA) HOMOLOG 219 305 - -
Psa4g0489 313 PANTHER TANKYRASE-LIKE 219 305 - -
Psa4g0489 313 ProSiteProfiles Ankyrin repeat profile. 229 261 IPR002110 GO:0005515
Psa4g0489 313 SMART ANK_2a 229 258 IPR002110 GO:0005515
Psa4g0489 313 SMART ANK_2a 262 291 IPR002110 GO:0005515
Psa4g0489 313 Pfam Ankyrin repeats (3 copies) 224 286 IPR002110 GO:0005515
Psa4g0489 313 SUPERFAMILY Ankyrin repeat 222 287 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0489 Psa-Chr4 29694985 29698589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0489 126 282 Ion Channels AT2G25600 29.936 3.83e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0489 - - gmx:100527544 159.844