Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0487 ATGGAAGGAATCCCAATTGGAAGAAAACTAAATCTCTTGGAACATCATAGTTATGATGAACTTGTTAAAGCTCTTTGTCATATGTTTAGAACAATCATTCTATGTCCTAACTCGCAACCACTTAGTTCTTGGAATTTTCATGTTCTAACTTACGAAGATCAAGAAGGCGACTGGATGATGGTCGGAGATGTCCCTTGGGAGATGTTTTTGTCAAGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGCTGCTAG 255 0.3922 MEGIPIGRKLNLLEHHSYDELVKALCHMFRTIILCPNSQPLSSWNFHVLTYEDQEGDWMMVGDVPWEMFLSSVKRLKITRADSC* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0487 84 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 84 IPR003311 GO:0005634|GO:0006355
Psa4g0487 84 Pfam AUX/IAA family 1 80 IPR033389 -
Psa4g0487 84 ProSiteProfiles PB1 domain profile. 1 83 IPR000270 GO:0005515
Psa4g0487 84 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 1 84 - -
Psa4g0487 84 SUPERFAMILY CAD & PB1 domains 2 78 - -
Psa4g0487 84 Gene3D - 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0487 Psa-Chr4 29668995 29669485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0487 1 82 B3 DNA Binding Superfamily AT2G46530 37.805 1.09e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa4g0487 AUX_IAA 2e-26 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0487 K14484 - gmx:100818083 155.221