Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0447 ATGAAGGCTCCACCTAATGGTTTCTTGCCCGCTTCCGGAGAAGGAGAAAGGAAGACAATCAATTCAGAGTTATGGCATGCTTGTGCCGGACCTTTGGTTTCTTTGCCACCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTCGCAGCTTCCATGCAAAAGCAGACCGACTTCATACCTAGTTACCCGAACCTTCCGTCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACCGACGAAGTCTATGCACAGATGACCCTTCAACCTGTAACCAAATATGACAAGGAAGCAATACTGGCATCAGACTTGGGTCTCAGACAAAACCGTCAACCGGCCGAATTCTTTTGCAAGACTCTAACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAAAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAGTTCGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGACACTTATTGACTACTGGTTGGAGTGTCTTTATCAGCACAAAAAGACTTTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGTTTGAGGCGCGCTAATAGGCAGCAGCCAGCGCTTTCTTCATCAGTGATATCCAGCGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCACGCTGCTGCAAATAACAGTCCTTTTACTATATATTACAATCCAAGGGCCAGCCCCTCGGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTATGCTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTGCGGAGATATATGGGTACAGTTACTGGAATCAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGTAATCTTCAGATTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTTTCTATTTGGGATGTTGAGCCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTCAGGCAAAAGTTCCCAAGGCAACCTGGAATGCCAGATGATGAGTCTGATGTAGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGACGAATTTGGCATGAAGGACGCCTCAAGTTCAGGCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTTTCAGGTGGTCAATCAGGATGTTTTCCACCCATGCTCTCATCTAATACTCTCCATGGTAATCTTAGCACCGACGACCCATCCAAATTATTAAGTTTTCAAACTCCACTCCTCTCTGCACCAAATCATCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAACAATCCCCAGCATCATGGCCTCAGCAGCAACAACAGCAACAGCAGCAACAACAGTTACAACAACAACAGTTACAGCAGCAACACCAGCAGCTACAGTCATTGTCACAAATACCAATGAACCAGTTTCAGCAGCAGAGGCAACAGCAGGTGCCTGAATCACAAAACCTGACACTGCTACAGCAACAGATGACTCAGCAGCTGGGACAGCAGCCGCAGAAACAGCCACAGTCATCTCAACATGCTATTATGAATAACGGTGTAATTGCTTCTAACCAGATTTCAAATCAATTTGCACAGCAACCGGTAACCTATGGTCAGCTTCAGCAACAACAATTACTCCCAGGAAGTATCCCACTCCAGCAAAGTATTCAATCAGCCGGTAAGAATACATTCCCACTGACATCCTTACCACAAGACTCACAGTTTCAGCAACAGATAGACCAACAAGCGAGTCTCTTGCAAAGGCAGCAGCAACAGACACAGTTACAACAATCCCCATTGCAGGTGTTGCAACAAAGCCAGCAACAGAGGGTGACACCAAATCATCCAGTGGCTCAAATGTCTCAACAAAACACCTCAGAACAACAATTGCAGCTACAGTTTTTGCACAAATTGCAGCAGCAGCAACAACAACAACAATTTCTTTCGACGTCAAGCCCACTTTTACAATCTCAGTTTCTACAACAAAATACTCATCAACAAAGCCAGCAATTACCGCAGCTTCCTATATCCCAACATCATACTCAACAGCTTGGCAATAATGCATTTTCAACGGAGAAGCTTCTTAACAGCAACAATCTATCTTCTTCATCTCTTATGCAATCACAACAGCTTTCTGTGAATCAAACCCTGAATACACAGAAGCCACTCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCGCCATCTACAAATAACTGCCAGATATCTCAACCAAACAGTCTGAAAAGAAATCAACAAGTACCAACTACAATTGGCGGGATCTTGGTAGCAGAGCCTGCCAGTAATCTGATACAGGACCTTCAGAGTAAGTCTGACATGCATATCAAACACGAGTTCTCGAATGTAAAAGGATCTGACCAGCTAAAGTATAAAGGCATAACTACTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATGGATCCTGGCAATGTTCAGCAGAGTTTGCCACTATCCAACTTCTGCATGGAAGGCGACGTCCAATCGAACCCTAGAAACAATCTGACATTTGACTCTAATCTTGATGGTTTAATGTCTGATACCATGCTTTCAAGGGGTTATGATTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGAGGTGCTCCAAGGGACATTGAAACCGAGCTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTGCCAGACACACTTTTTAAGCCCGGTTGCTCAAATGATGTTGGCATTAATGATGCTTCTGGGGTTTTGAACAACGGCTTGCGGGCAAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGAGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGGTATGATGAACTCCGGTATGATTTGGCAAGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTAGATCATGAAAATGACATTCTTCTTGTTGGCGATGACCCTTGGGAGGAATTTGTAAGTTGTGTTCAAAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGTGATTTAGGTAATGTTACAATCCCAAACCAAGCATCCAGTGGGGCAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3366 0.4364 MKAPPNGFLPASGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDLGLRQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDSSWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDVEPVVTPFYICPPPFFRQKFPRQPGMPDDESDVENAFKRAMPWLGDEFGMKDASSSGFPGLSLVQWMSMQQNNQFSGGQSGCFPPMLSSNTLHGNLSTDDPSKLLSFQTPLLSAPNHQFNKPNLPNQINQLQQSPASWPQQQQQQQQQQQLQQQQLQQQHQQLQSLSQIPMNQFQQQRQQQVPESQNLTLLQQQMTQQLGQQPQKQPQSSQHAIMNNGVIASNQISNQFAQQPVTYGQLQQQQLLPGSIPLQQSIQSAGKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQTQLQQSPLQVLQQSQQQRVTPNHPVAQMSQQNTSEQQLQLQFLHKLQQQQQQQQFLSTSSPLLQSQFLQQNTHQQSQQLPQLPISQHHTQQLGNNAFSTEKLLNSNNLSSSSLMQSQQLSVNQTLNTQKPLTITRVPSTLTDGEAPSCSTSPSTNNCQISQPNSLKRNQQVPTTIGGILVAEPASNLIQDLQSKSDMHIKHEFSNVKGSDQLKYKGITTDQLEASSGTSYCMDPGNVQQSLPLSNFCMEGDVQSNPRNNLTFDSNLDGLMSDTMLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPDTLFKPGCSNDVGINDASGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGADSGNAWRGQYDDNSAASFNR* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0447 1121 ProSiteProfiles PB1 domain profile. 994 1087 IPR000270 GO:0005515
Psa4g0447 1121 Gene3D - 124 227 IPR015300 -
Psa4g0447 1121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1108 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa4g0447 1121 Gene3D - 289 360 - -
Psa4g0447 1121 SMART B3_2 126 228 IPR003340 GO:0003677
Psa4g0447 1121 CDD B3_DNA 125 217 IPR003340 GO:0003677
Psa4g0447 1121 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Psa4g0447 1121 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Psa4g0447 1121 Gene3D - 989 1083 - -
Psa4g0447 1121 PANTHER AUXIN RESPONSE FACTOR 19 1 1108 - -
Psa4g0447 1121 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa4g0447 1121 MobiDBLite consensus disorder prediction 781 812 - -
Psa4g0447 1121 MobiDBLite consensus disorder prediction 657 677 - -
Psa4g0447 1121 Pfam AUX/IAA family 989 1080 IPR033389 -
Psa4g0447 1121 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Psa4g0447 1121 SUPERFAMILY CAD & PB1 domains 1007 1072 - -
Psa4g0447 1121 Coils Coil 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0447 Psa-Chr4 26922851 26928313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0447 1 489 B3 DNA Binding Superfamily AT1G19220 82.857 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa4g0447 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0447 K14486 - gmx:100816054 1563.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0447 4 26922851 26928313 Psa4g0447 4 26922851 26928313 ECH