Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa4g0443 | ATGCTACCACAAAAGCTTAGACAGAATCCAATTATGCAACACTCTCTCTACCATCACCCAGCTCTTATCACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTCTATGTAGGCAACATTCATCCTCAAGTTACAGAAGCACTTCTTCAAGAGCTTTTTTCAAATGCTGGCGCGCTTGAAGGTTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGATTTGTCGACTACTTTGATCGCAGTTCAGCTGCTATTGCTATTGTTACTCTCAACGGAAGGAATATTTTTGGACAGGCTATCAAAGTTAACTGGGCTTATGCTCGTGGCCAGAGAGAAGACACTTCAGGACACTTTCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCAGATCCAGGGGATTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCGCAAAGTGCCATAAATGAGTTAACTGGTAAATGGCTTGGCAGTAGACAGATTCGTTGTAATTGGGCCACGAAAGGAGCCAATACCAATGATGAAAAGCAGAGTTCAGATTGCAAAGTTGTTGTGGAGTTAGCTAGTGGAGTTTCTGGGGAGATCACAGAAGAACGGCAAGAAATTACCAGTTATGACGGTCCAGAGAAGAATCCCCAATACACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTCGATCTCCATCATCATTTTCACGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGGGATAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGTAACACTCGGTTTCTGTTCGGTAAACCTATCAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCGGGAACAGCCTCTACTCCTCTTCCTCCACCAGCTTCTCCGCATGTACCAGTGCCAGGTTTTTCACTTGCCGGTCTTGCAGCGTATGAACGCCAGATGGCTTTGAGCAAAATGAACGGTGCACACGCCCTTCTGCAACAGCAGCAGAATCAGCATGCCCTTAAGCAGGCAGCCATGGGAATGGGTGCTCTTGGAGCTGGGTATGGTACAGGATTCCCTAATGTCGCCGCCGCCCAGAACCTTATGTACTATCAGTAA | 1257 | 0.4622 | MLPQKLRQNPIMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEALLQELFSNAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINELTGKWLGSRQIRCNWATKGANTNDEKQSSDCKVVVELASGVSGEITEERQEITSYDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKPTPPGTASTPLPPPASPHVPVPGFSLAGLAAYERQMALSKMNGAHALLQQQQNQHALKQAAMGMGALGAGYGTGFPNVAAAQNLMYYQ* | 419 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa4g0443 | 418 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 256 | 330 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 4 | 403 | - | - | |
Psa4g0443 | 418 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 124 | IPR035979 | GO:0003676 | |
Psa4g0443 | 418 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | Gene3D | - | 233 | 334 | IPR012677 | - | |
Psa4g0443 | 418 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | PANTHER | NUCLEOLYSIN TIAR-LIKE PROTEIN | 4 | 403 | - | - | |
Psa4g0443 | 418 | SUPERFAMILY | RNA-binding domain, RBD | 126 | 213 | IPR035979 | GO:0003676 | |
Psa4g0443 | 418 | CDD | RRM1_TIA1_like | 48 | 118 | - | - | |
Psa4g0443 | 418 | SUPERFAMILY | RNA-binding domain, RBD | 248 | 335 | IPR035979 | GO:0003676 | |
Psa4g0443 | 418 | CDD | RRM3_TIA1_like | 256 | 330 | - | - | |
Psa4g0443 | 418 | SMART | rrm1_1 | 257 | 326 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | SMART | rrm1_1 | 132 | 205 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | CDD | RRM2_PUB1 | 132 | 206 | - | - | |
Psa4g0443 | 418 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 258 | 324 | IPR000504 | GO:0003723 | |
Psa4g0443 | 418 | Gene3D | - | 7 | 129 | IPR012677 | - | |
Psa4g0443 | 418 | Gene3D | - | 130 | 222 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa4g0443 | Psa-Chr4 | 26821670 | 26828880 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa4g0443 | 47 | 330 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 30.847 | 2.37e-26 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa4g0443 | K13201 | - | gmx:100813736 | 654.44 |