Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0443 ATGCTACCACAAAAGCTTAGACAGAATCCAATTATGCAACACTCTCTCTACCATCACCCAGCTCTTATCACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTCTATGTAGGCAACATTCATCCTCAAGTTACAGAAGCACTTCTTCAAGAGCTTTTTTCAAATGCTGGCGCGCTTGAAGGTTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGATTTGTCGACTACTTTGATCGCAGTTCAGCTGCTATTGCTATTGTTACTCTCAACGGAAGGAATATTTTTGGACAGGCTATCAAAGTTAACTGGGCTTATGCTCGTGGCCAGAGAGAAGACACTTCAGGACACTTTCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCAGATCCAGGGGATTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCGCAAAGTGCCATAAATGAGTTAACTGGTAAATGGCTTGGCAGTAGACAGATTCGTTGTAATTGGGCCACGAAAGGAGCCAATACCAATGATGAAAAGCAGAGTTCAGATTGCAAAGTTGTTGTGGAGTTAGCTAGTGGAGTTTCTGGGGAGATCACAGAAGAACGGCAAGAAATTACCAGTTATGACGGTCCAGAGAAGAATCCCCAATACACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTCGATCTCCATCATCATTTTCACGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGGGATAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGTAACACTCGGTTTCTGTTCGGTAAACCTATCAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCGGGAACAGCCTCTACTCCTCTTCCTCCACCAGCTTCTCCGCATGTACCAGTGCCAGGTTTTTCACTTGCCGGTCTTGCAGCGTATGAACGCCAGATGGCTTTGAGCAAAATGAACGGTGCACACGCCCTTCTGCAACAGCAGCAGAATCAGCATGCCCTTAAGCAGGCAGCCATGGGAATGGGTGCTCTTGGAGCTGGGTATGGTACAGGATTCCCTAATGTCGCCGCCGCCCAGAACCTTATGTACTATCAGTAA 1257 0.4622 MLPQKLRQNPIMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEALLQELFSNAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINELTGKWLGSRQIRCNWATKGANTNDEKQSSDCKVVVELASGVSGEITEERQEITSYDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKPTPPGTASTPLPPPASPHVPVPGFSLAGLAAYERQMALSKMNGAHALLQQQQNQHALKQAAMGMGALGAGYGTGFPNVAAAQNLMYYQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0443 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Psa4g0443 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 403 - -
Psa4g0443 418 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Psa4g0443 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Psa4g0443 418 Gene3D - 233 334 IPR012677 -
Psa4g0443 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Psa4g0443 418 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 4 403 - -
Psa4g0443 418 SUPERFAMILY RNA-binding domain, RBD 126 213 IPR035979 GO:0003676
Psa4g0443 418 CDD RRM1_TIA1_like 48 118 - -
Psa4g0443 418 SUPERFAMILY RNA-binding domain, RBD 248 335 IPR035979 GO:0003676
Psa4g0443 418 CDD RRM3_TIA1_like 256 330 - -
Psa4g0443 418 SMART rrm1_1 257 326 IPR000504 GO:0003723
Psa4g0443 418 SMART rrm1_1 47 116 IPR000504 GO:0003723
Psa4g0443 418 SMART rrm1_1 132 205 IPR000504 GO:0003723
Psa4g0443 418 CDD RRM2_PUB1 132 206 - -
Psa4g0443 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Psa4g0443 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Psa4g0443 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 324 IPR000504 GO:0003723
Psa4g0443 418 Gene3D - 7 129 IPR012677 -
Psa4g0443 418 Gene3D - 130 222 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0443 Psa-Chr4 26821670 26828880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0443 47 330 Eukaryotic Initiation Factors Gene Family AT2G23350 30.847 2.37e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0443 K13201 - gmx:100813736 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0443 4 26821670 26828880 Psa4g0443 4 26821670 26828880 ECH