Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0441 ATGTCGACTTCATCGGAGAAATCCACGTTTTCTCAAACATGCAACCTCCTCAGCCGATACATCAAGGACAAGGGTAATTCCGGTACCCTAACAAATGTTGTCGCGTCTTCAAACAATCTCACAACTAAGGATTTCTTAACTCCAATGTCTATGGTTAAGGAACCGGAAGCTAAAGCGTCACAACTGACAATGTTTTATAATGGACAAGTTATTGTTTTGGATGATTTTCCGGCTGAGAAAGTGGAAGAGTTAAAGGCATATGCTCAGACAGAGTCTTTGGTTACTCCGATTCCTCAACTCCCTTGTGGAACGATTGTTGTTGATATGCCAATTGCTAGAAAAGCTTCGCTTCTTAGATTCATGGAGAAGAGAAAAAACAGAGTTGCTGCCAAATCACCATACTATAAAACGATTAAAACCGTTTCTGATCCAGTCAAGTCTTCTGAATCCATTCCTTGGCTTGTGTTAGGAGCTAAATCGACGTGA 486 0.4095 MSTSSEKSTFSQTCNLLSRYIKDKGNSGTLTNVVASSNNLTTKDFLTPMSMVKEPEAKASQLTMFYNGQVIVLDDFPAEKVEELKAYAQTESLVTPIPQLPCGTIVVDMPIARKASLLRFMEKRKNRVAAKSPYYKTIKTVSDPVKSSESIPWLVLGAKST* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0441 161 SMART tify_2 55 90 IPR010399 -
Psa4g0441 161 Pfam tify domain 57 84 IPR010399 -
Psa4g0441 161 Pfam Jas motif 110 135 IPR018467 -
Psa4g0441 161 ProSiteProfiles Tify domain profile. 55 90 IPR010399 -
Psa4g0441 161 PANTHER PROTEIN TIFY 10A 4 157 - -
Psa4g0441 161 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 157 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0441 Psa-Chr4 26813802 26815027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0441 4 159 Tify Gene Family AT1G19180 29.461 2.83e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa4g0441 tify 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0441 K13464 - gmx:100807356 131.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0441 4 26813802 26815027 Psa1g3079 1 269108420 269112394 PCT