Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0425 ATGACTGTGATGAAAATTATGTGGAAATCAATATTTCCAAGCTGTTACAAGGCTGAAGATACTGAATACTCTTCGGCCAAAGAAACAACAAAAGTGGTTGCTACAAAGACAAGTTCTTTCAACAGAATCTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCTGAAGATCTTTCAATTTCTTTAGCTGGTTCTAATCTCTATGTTTTCACACTTGCTGAGCTCAAGATTATTACTCAGAGTTTCTCTTCAACGAATTTTCTTGGTGAAGGAGGGTTTGGTCCTGTTCATAAAGGTTTCATTGATGATAAGGTTAGGCATGGACTTGAACCTCAACCTGTGGCTGTTAAGCTCCTAGATTTGGATGGCTCTCAGGGTCATAAAGAATGGCTGACTGAGGTTGTGTTTCTTGGTCAACTGAGACATGAACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAAGAACACAGGCTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTGGAAAATCAACTATTTAGAAGATATTCAGCATCGTTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCCTTTTTACATGATGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCCTCAAACATCTTATTAGACTCGGACTATAATGCAAAACTCTCTGATTTTGGTTTGGCAAAAGATGGCCCTGAAGGTGATGACACACATGTTTCAACTAGAGTTATGGGTACTCAAGGTTACGCCGCACCCGAATATATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCCTATTGGAGCTACTAACCGGAAGAAGATCAGTGGACAAGGCACGTCCACCACGAGAACACAATCTAGTGGAATGGGCCAGACCGGTTTTAAACGACGCTCGTAAGCTCACCAGAATAATGGATCCAAGGCTTGAAGGACAGTATTCAGAAATGGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTCTTAGCCATAGACCAAGAAACCGACCTACAATGTCTACCGTAGTGAACACTCTTGAACCTCTTCAAGATTTCGACGATATACCAATAGGTCCATTTGTTTACACAGCTCCGAGTGATGTTAGTAATAATGAAGTGAGGAACGAGAATAACAACATCGATACACCAAAGGAGAGAAAAAGAGAAAGTACTCATCATCATCATCGTAGAAATCAAAATGGTAGTAATAATAATAATGAAGTAGTAGTACATAAGAAAGATGGTGAAGAATATTATGATAATCCTAAAGAGAAGAAAAGGGAAAGTAGTGAGAATCATAGAAGACATCATCATCATCGTCAGAATGGACATAGGCATCCATTAAAGTCACCAAAAGAACAAAGACATGTACATCAAAGTGGGTCACACTCACCTGATACATCCATTACATCAGAAAGCCAAGGAAATTAA 1476 0.3916 MTVMKIMWKSIFPSCYKAEDTEYSSAKETTKVVATKTSSFNRISLTDLSFPSATTLSEDLSISLAGSNLYVFTLAELKIITQSFSSTNFLGEGGFGPVHKGFIDDKVRHGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHEHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKARPPREHNLVEWARPVLNDARKLTRIMDPRLEGQYSEMGARKAAALAYQCLSHRPRNRPTMSTVVNTLEPLQDFDDIPIGPFVYTAPSDVSNNEVRNENNNIDTPKERKRESTHHHHRRNQNGSNNNNEVVVHKKDGEEYYDNPKEKKRESSENHRRHHHHRQNGHRHPLKSPKEQRHVHQSGSHSPDTSITSESQGN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0425 491 MobiDBLite consensus disorder prediction 476 491 - -
Psa4g0425 491 MobiDBLite consensus disorder prediction 383 491 - -
Psa4g0425 491 Gene3D Phosphorylase Kinase; domain 1 24 166 - -
Psa4g0425 491 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 29 419 - -
Psa4g0425 491 CDD STKc_IRAK 90 364 - -
Psa4g0425 491 Pfam Protein tyrosine and serine/threonine kinase 88 361 IPR001245 GO:0004672|GO:0006468
Psa4g0425 491 Gene3D Transferase(Phosphotransferase) domain 1 167 370 - -
Psa4g0425 491 MobiDBLite consensus disorder prediction 445 467 - -
Psa4g0425 491 PANTHER OS01G0588500 PROTEIN-RELATED 29 419 - -
Psa4g0425 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Psa4g0425 491 ProSiteProfiles Protein kinase domain profile. 84 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0425 491 MobiDBLite consensus disorder prediction 424 444 - -
Psa4g0425 491 SUPERFAMILY Protein kinase-like (PK-like) 60 362 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0425 Psa-Chr4 26038112 26041085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0425 72 361 Glycoside Hydrolase AT3G07070 54.266 2.50e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g0425 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0425 - - mtr:MTR_4g125260 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0425 4 26038112 26041085 Psa5g0596 5 47649593 47653644 ECH
Psa4g0425 4 26038112 26041085 Psa6g0533 6 17599482 17602281 ECH
Psa4g0425 4 26038112 26041085 Psa4g0425 4 26038112 26041085 ECH