Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0393 ATGTCTGCACCAGTGAACATTATTGTTGGTTCTCATGTCTGGGTTGAAGATCCAGCACTAGCATGGATTGGTGGTGAAGTTACTAAAATCAGTGGTGAAAATGTCCATGTTCGCACTGGAGATGGGAAAACAGTTGTCAAAAGTATCTCAAAAGTTATTCCCAAGGATAACGAAGCCCCTCCTGGTGGTGTAGATGACATGACAAAATTGTCATACTTGCATGAGCCAGGAGTTCTGAATAACTTGGCAACTAGATATGAACTTAATGAAATCTATACATATACTGGAAATATCCTGATTGCGATAAACCCATTTCAAAGATTACCACATCTATATGATACTCACATGATGGAACAATACAAAGGAGCTGCATTTGGAGAGTTGAGTCCCCATGTTTTTGCAGTTGCAGATGTTGCATACAGGGCAATGATCGTTGAGGGAAAAAGCAACTCAATTCTTGTTAGTGGTGAAAGTGGGGCTGGTAAGACAGAGACAACAAAAATGCTTATGCGATATCTTGCTTACCTTGGGGGCCGATCTGGAGTAGAAGGGCGGACAGTTGAACAGCAAGTTTTAGAATCTAATCCAGTTCTTGAAGCATTTGGCAATGCCAAAACAGTGAGAAACAACAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGAATTTCCGGGGCAGCTATACGGACTTATCTACTTGAGAGATCCCGTGTTTGTCAAGTTTCAGATCCTGAAAGAAATTACCATTGTTTTTACCTTCTTTGTGCAGCACCAGCTGAGGAAAAAGAAAAGTACAAGCTGGGAAGTGCTAACTCCTTCCATTACCTAAACCAATCCAAATGCTATGGGCTGGATGGAGTGGACGATGCAGAAGAATATCTTGCAACTCGAAGGGCAATGGATATTGTTGGAATCAGTGAGGAGGAGCAGGATGCAATTTTTAGGGTTGTAGCAGCAGTTTTGCATCTTGGAAATATTGAATTTGCCAAAGGGGAGGAGATTGATTCTTCTGTCCTTAAGGATGAGAAGTCTAGGTTCCATCTTAATACGACTGCTGAGCTTCTCAAGTGTGATGCCAAGAGCTTGGAAGATGCACTGATTCAGCGTGTCATGGTAACTCCTGAGGAGGTTATTACAAGAACACTTGATCCTGTTGCAGCTCTCAGTAGCAGGGATGCATTAGCTAAAACTATCTATTGTCGTTTGTTTGACTGGCTAGTGGAGAAGATTAACAATTCAATTGGGCAAGATCCAAATTCAAAATCTATCATTGGAGTTCTTGATATCTATGGATTTGAAAGTTTTAAGTTTAATAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTACAGCAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACACCAAAGAAGAAATCGATTGGAGTTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTTCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACACATGAAACATTCGCTCAGAAGTTGTACCAGACATTCAAGAACAACAAGCGCTTTATCAAACCGAAACTTTCTCGAACAAATTTCACAATATCTCATTATGCGGGGGAGGTGACATATCAGGCTGATATGTTTCTGGATAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGCTGATAGCCTCAAAATGCTCCTTTGTGGCAGGTCTTTTCCCCCGCTCTCCAGAAGAGTCTTCAAAATCATCAAAGTTTTCTTCAATAGGATCTCGCTTTAAGTCACAACTTCAGTCTTTGATGGAGACCCTAAGTTCAACAGAACCTCACTATATTAGATGCGTGAAGCCAAATAATGTTCTCAAGCCTGCTATTTTTGAAAATCTCAATATAATCCAACAATTGCGCTGTGGTGGTGTTCTAGAGGCGATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACCTTTTATGAATTTCTCAACCGATTTGGCGTTCTTGCCCCTGAAGTTCTGGATGGAAACTACGATGACCAGGTTGCATGTCAAATGATCCTGGGTAAAATGGGTATGAAAGGCTATCAGATAGGCAAGACAAAGGTTTTCCTAAGAGCAGGTCAGATGGCTGAGTTGGATGCAAGAAGATCCGAGGTCCTTGGAAATGCAGCTAGAGTCATTCAGAGGCAAACGCGTACCCATATTGCACGCAAGGAATTTATTGGATTGCGTCGTGCTGCAATTAGTTTGCAATCTAATTTGCGAGGAATATTGGCTCGGAAGCTTTACGAGCAGTTGCGACGTGAAGCAGCAGCTCTGAAAATAGAAAAGAACTTCAAAGGATACATTGCCAGGAAATCTTACTTTAAAGCACGATCATCTGCAATCATATTGCAGACAGGATTAAGGGCTATGAAGGCTCGTGATGAATTTAGGTTTAGAAAGCAAACAAAGGCTGCAATTCAAATCCAGGCTCATTTTCGCCGGCAAGTTACATATTCATATTATAAAAAATTGCAAAAGGCTGTGGTTGTTACTCAGTGTGGTTGGAGGAGCAGGGTTGCTAGAAAGGAACTAAGAATGCTTAAAATGGCTGCAAGAGATACAGGGGCTCTTAAAGAAGCCAAAGACAAGCTAGAAAAGCGCGTTGAAGAACTTACATGGCGTTTGCAAATCGAGAAGCGTTTGAGAACCGATTTAGAAGAGGAGAAAACACAAGAGCTTACCAAGTTACATGATGCTTTAAATACAATGCAAATACAAGTTGAAGAAGCAAATGCCAGGGTCATCAAAGAGCGTGAAGCCGCACAGAAAGCAATTAAAGAAGCACCTCCAGTTATTAAAGAGACTCCTGTTATAATTCAAGATACTGAGAAGATTAATTCTTTACTGTCTGAAATCAATAGTTTAAAGGATTCACTGCTATTGGAAAGAGAGGTTAAAGAAGAGGCCAAAAAAGCTCAGGAAGAGGCTGAAGCTAGAAATAAGGAGCTGATTAAAAAAGTTGAGGACTCCGATCGCAAAGTGGATCAACTCCAAGAATTGGTTCAGAGATTGGAGGAAAAAATTGCCAATTCAGAGTCAGAAAATCAAATTCTTCGCCAACAAGCATTGGCTGTTTCACCAACCGCTAAAGCTCTTACTACCAGACCTAAGACAGTGATTATTCAGAGGACACCAGAAAATGGGAATGCTCTAAACGGGGAAGTAAAACCTGGACAAGATATGACTCTTGCTCTATCCAATGTGCGTGAGCCTGAATCTGAAGGAAAACCGCAGAAATCTCTGAATGAGAAACAACAAGAAAACCAGGACTTGTTGATCAAGTGCATATCACAAGATTTGGGATTTTCTGGTGGCAAACCTGTTGCTGCATGCGTCATATATAAATGCCTTCTACACTGGAGGTCATTTGAAGTTGAAAGAACAACTGTCTTTGACCGTATCATTCAAACAATAGCTTCAGCTGTTGAGGCCCAGGATAATACCGATGTATTAGCCTATTGGTTGTCTAATACATCTACTTTATTGATGCTGCTCCAACGCACCCTCAAAGCAAGTGGAGCTGCTAGCTTAACACCCCAGCGACGGAGAACAGCATCATCTTCTCTGTTTGGAAGGATGTCTCAAGGGCTAAGGGCATCTCCTCAAAGTGCTGGGTTGCCATTTATAAATGGAAGAGGTCTTAGTAGACTTGATGGTTTACGACAAGTAGAAGCAAAATATCCGGCACTTCTGTTTAAGCAACAGCTTACTGCGTTCCTTGAGAAGTTATATGGAATGATACGAGACAACCTGAAAAAGGAGATATCCCCATTACTTGGACTGTGTATACAGGCTCCAAGGACCTCCCGCCAAGGTTTAGTAAAAGGACGCTCACATGCCAATGCGGTTGCTCAGCAAGCTTTAATTGCTCACTGGCAAAGTATTGTGAAAAGCTTGAACAACTCGCTAAAGATAATGAAAGCAAACTATGCGCCTCCTTTCTTGGTCCGTAAAGTGTTCACTCAAATATTCTCATTCATCGATGTTCAGTTATTCAACAGTCTTCTGCTGCGTCGCGAGTGTTGTTCATTCAGCAACGGGGAGTATGTGAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCATCGAGGCAACAGAAGAGTACACTGGCTCGGCGTGGGAGGAACTAAAACATATCAGGCAGGCAGTTGGATTCCTGGTGATACATCAAAAACCCAAGAAGTCCCTGAATGAAATAACAAAGGAGCTTTGTCCTGGTCTCAGTATACAACAGTTATATAGGATAAGTACAATGTACTGGGATGACAAATACGGCACTCACAGTGTGTCTACGGATGTTACAACAACCATGAGAGCTATGGTCGCGGAGGACTCTAGTAATGCTGTCAGCACTTCTTTCCTATTAGACGATGACTCAAGCATTCCATTTTCGGTGGACGACATCTCCAAATCCATGCAACAAGTAGAAGTTGCAGACGTGGATCCTCCTCCGTTGATACGTGAGAACTCAGGGTTCGGGTTCTTACTAGCTCGTGCAGAGTAA 4593 0.4152 MSAPVNIIVGSHVWVEDPALAWIGGEVTKISGENVHVRTGDGKTVVKSISKVIPKDNEAPPGGVDDMTKLSYLHEPGVLNNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRAMIVEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPAEEKEKYKLGSANSFHYLNQSKCYGLDGVDDAEEYLATRRAMDIVGISEEEQDAIFRVVAAVLHLGNIEFAKGEEIDSSVLKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALSSRDALAKTIYCRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTNFTISHYAGEVTYQADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPRSPEESSKSSKFSSIGSRFKSQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDQVACQMILGKMGMKGYQIGKTKVFLRAGQMAELDARRSEVLGNAARVIQRQTRTHIARKEFIGLRRAAISLQSNLRGILARKLYEQLRREAAALKIEKNFKGYIARKSYFKARSSAIILQTGLRAMKARDEFRFRKQTKAAIQIQAHFRRQVTYSYYKKLQKAVVVTQCGWRSRVARKELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKTQELTKLHDALNTMQIQVEEANARVIKEREAAQKAIKEAPPVIKETPVIIQDTEKINSLLSEINSLKDSLLLEREVKEEAKKAQEEAEARNKELIKKVEDSDRKVDQLQELVQRLEEKIANSESENQILRQQALAVSPTAKALTTRPKTVIIQRTPENGNALNGEVKPGQDMTLALSNVREPESEGKPQKSLNEKQQENQDLLIKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLMLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQSAGLPFINGRGLSRLDGLRQVEAKYPALLFKQQLTAFLEKLYGMIRDNLKKEISPLLGLCIQAPRTSRQGLVKGRSHANAVAQQALIAHWQSIVKSLNNSLKIMKANYAPPFLVRKVFTQIFSFIDVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCIEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPGLSIQQLYRISTMYWDDKYGTHSVSTDVTTTMRAMVAEDSSNAVSTSFLLDDDSSIPFSVDDISKSMQQVEVADVDPPPLIRENSGFGFLLARAE* 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0393 1530 CDD MyosinXI_CBD 1113 1496 IPR037975 GO:0007015
Psa4g0393 1530 Coils Coil 884 918 - -
Psa4g0393 1530 ProSiteProfiles Dilute domain profile. 1162 1473 IPR002710 -
Psa4g0393 1530 SMART iq_5 757 779 IPR000048 GO:0005515
Psa4g0393 1530 SMART iq_5 853 875 IPR000048 GO:0005515
Psa4g0393 1530 SMART iq_5 782 804 IPR000048 GO:0005515
Psa4g0393 1530 SMART iq_5 830 852 IPR000048 GO:0005515
Psa4g0393 1530 SMART iq_5 734 756 IPR000048 GO:0005515
Psa4g0393 1530 SMART iq_5 805 827 IPR000048 GO:0005515
Psa4g0393 1530 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 CDD MYSc_Myo11 76 720 IPR036018 -
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Psa4g0393 1530 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Psa4g0393 1530 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Psa4g0393 1530 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Psa4g0393 1530 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Psa4g0393 1530 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Psa4g0393 1530 PANTHER MYOSIN-5 6 1526 - -
Psa4g0393 1530 Coils Coil 923 957 - -
Psa4g0393 1530 Gene3D - 667 730 - -
Psa4g0393 1530 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 Gene3D - 785 832 - -
Psa4g0393 1530 Gene3D - 735 784 - -
Psa4g0393 1530 Gene3D - 833 882 - -
Psa4g0393 1530 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 Gene3D - 252 310 - -
Psa4g0393 1530 Gene3D - 439 623 - -
Psa4g0393 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Psa4g0393 1530 Gene3D Kinesin motor domain 65 662 IPR036961 -
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Psa4g0393 1530 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 Coils Coil 985 1051 - -
Psa4g0393 1530 PANTHER MYOSIN 6 1526 - -
Psa4g0393 1530 SMART DIL_2 1348 1455 IPR002710 -
Psa4g0393 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Psa4g0393 1530 Pfam DIL domain 1349 1452 IPR002710 -
Psa4g0393 1530 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Psa4g0393 1530 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Psa4g0393 1530 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa4g0393 1530 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0393 Psa-Chr4 24421699 24439574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0393 67 1530 Myosins gene family AT5G20490 82.445 0.0 2514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0393 K10357 - gmx:100777802 2756.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0393 4 24421699 24439574 Psa4g0393 4 24421699 24439574 ECH