Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0390 ATGATGAATGGAAGAAACAGGTATCCTTTTACTCCTTCTCAATGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCAGGTATCAACATTCCACCTGATCTTCTCTTCACTATCAAAAAAAGCTACTTAGACTCAACAAGGCTCTCACCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAAAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAGATTCTGTTTCTGCTGTTGCTGTTGCTACTTCATCAATCTTATCAATGACTAAAAATAGCACTAGTCTTGATACTGATATTAACACTGCAGCACTCACCCCAACCTCTCATCCTGATAGTACTACTTACCATTATCCTCCACAAAACTCTTCTTATGCTTCTTCTCATCTTCAACACCCTTTCCTCTACCACAATAACCCTCCATCTTCAAGGCCTAGTTTCTCATTTCAAGACATCAACACTAGTGCTCCCATGTTTCTTGACAGTTCTGGTTCTTCCTCTCACAATAACAACAACACTGATTGCAGGAACAGGTATGTTTATGGACTGAGAGAGGAGGTAGATGAGCATGCTTTCTTCACTGAACCATCTGGAACTATAAGAAGTTTATCAGCTTCATCTATGGATGATCAATGGCAACTCACACCACTTACTATAAGCTCATCTTCCACTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGATCAGAATGAGTACTCTTATTTGCAACTTCAAAGCCTCAGTGACAACATCAACAACAACAACAACAACAACAGTAACAGCAACAACAGCAACAACTCAAAACAAGCACAGCAAGATCAAAGCTGTTACATCTCAGGTAGTGAAGAAACATTCATGAAAGATGGGAAGGAAGAACCTCAGAAGATTTTTCATCGTTTTTTCGATGAATGGCCACCGAAAAGCAGCAGAAACTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCAACATCATCTCATGATTTCACAACTTTCAGTTCCACAAACCACAGAGATGGTTGA 1200 0.3992 MMNGRNRYPFTPSQWQELEHQALIYKYMASGINIPPDLLFTIKKSYLDSTRLSPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTDSVSAVAVATSSILSMTKNSTSLDTDINTAALTPTSHPDSTTYHYPPQNSSYASSHLQHPFLYHNNPPSSRPSFSFQDINTSAPMFLDSSGSSSHNNNNTDCRNRYVYGLREEVDEHAFFTEPSGTIRSLSASSMDDQWQLTPLTISSSSTSKQRSCSGLSNDQNEYSYLQLQSLSDNINNNNNNNSNSNNSNNSKQAQQDQSCYISGSEETFMKDGKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNHRDG* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0390 399 Pfam WRC 75 117 IPR014977 -
Psa4g0390 399 PANTHER - 4 375 IPR031137 GO:0005634|GO:0006351|GO:0032502
Psa4g0390 399 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g0390 399 PANTHER GROWTH-REGULATING FACTOR 5 4 375 - -
Psa4g0390 399 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Psa4g0390 399 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g0390 399 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0390 Psa-Chr4 24180707 24183447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0390 6 117 GRF Transcription Factor Family AT3G13960 68.696 1.36e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Psa4g0390 WRC 8.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0390 - - mtr:MTR_4g125490 625.55