Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0388 ATGGGAAGAAGTCCTTGTTGTTCAAAGGAAGGCTTGAATAGAGGTGCTTGGACTGCTCATGAAGACAAAATCCTCACTGATTACATTAAGCTTCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTAAAAAGATGCGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTAAGACCGGATATCAAAAGAGGTAATATATCAACTGATGAAGAAGAACTTATCATCAGACTTCACAAATTACTCGGAAACAGATGGTCACTTATAGCGGGACGATTACCGGGACGAACAGACAATGAAATCAAGAATTATTGGAACACGAATTTAGGGAAAAAAGTGAAAGATCTGAATCAACAAAACACCAACAATTCTTCTCCTACTATGATGATCTCTACTAAACCGAAAAACTCAAAGATCACACAGAAACAGAACAATCCTAAGGCAATGATGCAAAACTCCCATGTTGTCCGTACAAAAGCTACAAAATGTTCTAAGGTATTATTCATAAACTCACTTCCTCACTCATCACCAATGCATACTTTGCAGAACAAAGACGAGACAGAGACAGAGACAGCAACAGAAACAAAACCATCAATGGCTGTCGATGCTGTGGCGAGTGATTCGACGAGTAACAACAGAAACGGTTTTCTGTCTTTTCCTGATAAAGATAAAGAACTGTCTGCAGATTTGTTGGTTGATTTTAACATTGGAGATGATATTTGCTTGTCCGAACTTCTGAACTCGGATTTCTCGGCGACGTGCAGTTTCGATTATAACGATCTGTTATCGTCGCCGTGTTCGGATCAGACTCGGATGTTTTCTGATGAGATTTTGAAGAACTGGACACAATGTAACTTTGGTGATGAAACTAATGTGTCTAACAATCTTCATTCTTTCACTTCCTTTCTTGAATCCAGTGAGGAAATTCTAGGAGAATGA 948 0.3871 MGRSPCCSKEGLNRGAWTAHEDKILTDYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISTDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTMMISTKPKNSKITQKQNNPKAMMQNSHVVRTKATKCSKVLFINSLPHSSPMHTLQNKDETETETATETKPSMAVDAVASDSTSNNRNGFLSFPDKDKELSADLLVDFNIGDDICLSELLNSDFSATCSFDYNDLLSSPCSDQTRMFSDEILKNWTQCNFGDETNVSNNLHSFTSFLESSEEILGE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0388 315 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 271 - -
Psa4g0388 315 Gene3D - 14 66 - -
Psa4g0388 315 CDD SANT 16 61 IPR001005 -
Psa4g0388 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa4g0388 315 MobiDBLite consensus disorder prediction 180 199 - -
Psa4g0388 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa4g0388 315 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa4g0388 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa4g0388 315 Gene3D - 70 164 - -
Psa4g0388 315 CDD SANT 71 112 IPR001005 -
Psa4g0388 315 SMART sant 66 114 IPR001005 -
Psa4g0388 315 SMART sant 13 63 IPR001005 -
Psa4g0388 315 PANTHER TRANSCRIPTION FACTOR TT2 1 271 - -
Psa4g0388 315 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Psa4g0388 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa4g0388 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0388 Psa-Chr4 24053978 24055493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0388 1 144 MYB Transcription Factor Family AT4G38620 63.889 3.49e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g0388 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0388 K09422 - gmx:100802704 401.749