Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g0378 | ATGGTTTGGTTTCAATGCGAAGATTGTGGAGATAACCTCAAAAAACCCAAGTTGCCCAATCACTTCCGATCATGCTCCGCCAACAAGCTTTCATGCATTGACTGTGGCCAAATGTTTGGGAGAGACACCGTTCAGAATCATACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCGAAAGGCCAAGGTAAAGCTTTGAATGGTTCAGCTGCCAAGCCTGGCAAAGATAAAAAGCAAAGGCCGGAAGTTGATATTAATGTGGGTTTATCTAATCGCCCTCCGTGGTTCTGTAGTCTTTGCAATACGAAAGCTACAAGCCAGCAGGCACTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAATCCCGAGCATTCCATGCTTCACAGCAGCCACCAGTCCAGGCAGATAAGCCTGCCCCTGATGCAAAGGATGCAGTGGAGGCTGCTTCTGATGGTACAGAGAAGAAAGATGGCAACAATGCAGAGCATCCAAAATTGCAGGAGTCTTCTGAACAAAATAACTTGAAACCAGGGAGTGAAGTTTCTTCAGAAAAGAAAAAGAGGAAACTTGATGCATCAGAGGGTGGCCTTATTAAAAAGTGCAAGAATGACACTTCAGTTGACACAGAGAATGGTGAAGTAATTCAAGGCGAGAAGACAAAAGAGAAGAAAATAAAATGGAAGAAGTTTATCAAAGCGGCCTTAAAATCCCATCCTGATGGATTGAAGATGAAGAAACTGAGAAAAGCTGTATTCAAAGCGCTGCAAGAGTCCAGCATTGTAGTAAATGAAGATGAATTGAACGACACACTTGAGCAGAAGATAAATTCTAGCTCCAAATTTGCAGTTGAAAAGAAGTATGTGCGACTAGTGGCCAAAGATTGA | 888 | 0.4313 | MVWFQCEDCGDNLKKPKLPNHFRSCSANKLSCIDCGQMFGRDTVQNHTQCITEAEKYGPKGQGKALNGSAAKPGKDKKQRPEVDINVGLSNRPPWFCSLCNTKATSQQALLLHAEGKKHGAKSRAFHASQQPPVQADKPAPDAKDAVEAASDGTEKKDGNNAEHPKLQESSEQNNLKPGSEVSSEKKKRKLDASEGGLIKKCKNDTSVDTENGEVIQGEKTKEKKIKWKKFIKAALKSHPDGLKMKKLRKAVFKALQESSIVVNEDELNDTLEQKINSSSKFAVEKKYVRLVAKD* | 296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g0378 | 295 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Psa4g0378 | 295 | Gene3D | Classic Zinc Finger | 72 | 125 | - | - | |
| Psa4g0378 | 295 | MobiDBLite | consensus disorder prediction | 141 | 165 | - | - | |
| Psa4g0378 | 295 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Psa4g0378 | 295 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 292 | IPR039999 | GO:0003677 | |
| Psa4g0378 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 89 | 126 | IPR036236 | - | |
| Psa4g0378 | 295 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
| Psa4g0378 | 295 | MobiDBLite | consensus disorder prediction | 181 | 208 | - | - | |
| Psa4g0378 | 295 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Psa4g0378 | 295 | SMART | ZnF_U1_5 | 92 | 126 | IPR003604 | GO:0003676|GO:0008270 | |
| Psa4g0378 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Psa4g0378 | 295 | MobiDBLite | consensus disorder prediction | 166 | 180 | - | - | |
| Psa4g0378 | 295 | Gene3D | - | 1 | 50 | - | - | |
| Psa4g0378 | 295 | MobiDBLite | consensus disorder prediction | 121 | 211 | - | - | |
| Psa4g0378 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Psa4g0378 | 295 | Pfam | Zinc-finger of C2H2 type | 95 | 119 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g0378 | 1 | 145 | C2H2 Transcription Factor Family | AT2G19380 | 41.667 | 2.86e-40 | 146 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g0378 | K15263 | - | gmx:100790703 | 415.616 |
Event-related genes