Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0370 ATGGCGGTGGCTCACGGTGGATGCGACGGTGAAATCGGTGGCGTCAGGTCTAACCTAATCCCATCAGTAAAAGCAGAGTTATTCGATGACAGTGCAGGTTCAAGTTCACCTGGTTACGACGACGTTTTAAGCGAAAGAAAAGACTCAGTCGTAACGGAAGAAGAAGGTGCTACAGCTTCTCACGCTATTCACATCAAAGAAGAAGTTGCTGAAGACGACGGTGCTAACGCTTCGTCTTCGATGGAGTTTCCAAAACCAATGGCAGGGTTGCACGAGGTTGGTCCACCGCCGTTTCTCAAGAAGACGTATGAAATGGTGGAGGATCCCGAAACCGACCCGATTGTTTCGTGGAGCGGTTCTCGTGATAGTTTCATTGTTTGGGATTATCATGAATTCTCCAAAGTTCTTCTTCCCAAATATTTTAAGCACAATAATTTCTCTAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGATTGATTCAGACCGATGGGAGTTTGCAAATGAAGGGTTTAAAGGAGGGAAGAAGCATTTGTTGAAGACCATAAGAAGGAGAAGTAAGTATAACAAACTACATCAAGGAGGATTCAATTTGATGACACCAGGTGTTGAATCTGAAGTAGAGAAACTTAAGAAGGACCAAAACATGTTGAAATTGGAAATTCTGAAACTAAGGCAGCAACAAGAGAATTCAAATATTCAACTCACAAATGTTAATGAGCGGGTTCGGCGTGCTGAGATGAAGCAATATCAAATGATATATTTCCTCACAAAAATGGCTAGAAAGCCGGTGTTTATGGATCAGTTAATTCAGAAGATGAAGCGGAAAAAAGAGGTTGATGGTGGTATAGATATGGTTAAAAGGCCTAGATTACTTGGAACACAAGGTACTAGTGTTGATTATAGGCCTCAAGGTCGAGAACAGTTTGATACTTTGCAGACTGAATTGAATGGACTTTTTACTGAAAATGTGAACATTGGTAGAATGGAACCACCGGTTTCTGATCCATTGGAGAATGGATTCGTTAGCTCTTTACATGAAATGAGGGCTTGCGGTGATTCTAGACAAAGTGCGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAGAAATTATTGAGTGAAAATTCTGTTGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAGTTAGAGGATTTGATTAGTAAACCAACGGATTGGGGTGGATCTGCTAGTGGTTTGGTTGGACAAACTAGTTGA 1257 0.4121 MAVAHGGCDGEIGGVRSNLIPSVKAELFDDSAGSSSPGYDDVLSERKDSVVTEEEGATASHAIHIKEEVAEDDGANASSSMEFPKPMAGLHEVGPPPFLKKTYEMVEDPETDPIVSWSGSRDSFIVWDYHEFSKVLLPKYFKHNNFSSFIRQLNTYGFRKIDSDRWEFANEGFKGGKKHLLKTIRRRSKYNKLHQGGFNLMTPGVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVNERVRRAEMKQYQMIYFLTKMARKPVFMDQLIQKMKRKKEVDGGIDMVKRPRLLGTQGTSVDYRPQGREQFDTLQTELNGLFTENVNIGRMEPPVSDPLENGFVSSLHEMRACGDSRQSAQDVSSAYHVMSEKLLSENSVVDEEMDVNDSNIYLELEDLISKPTDWGGSASGLVGQTS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0370 418 Pfam HSF-type DNA-binding 98 187 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 ProSitePatterns HSF-type DNA-binding domain signature. 137 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 76 407 - -
Psa4g0370 418 Gene3D - 91 188 IPR036388 -
Psa4g0370 418 Coils Coil 209 229 - -
Psa4g0370 418 MobiDBLite consensus disorder prediction 41 73 - -
Psa4g0370 418 SMART hsfneu3 94 187 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 76 407 IPR027725 -
Psa4g0370 418 MobiDBLite consensus disorder prediction 30 76 - -
Psa4g0370 418 PRINTS Heat shock factor (HSF) domain signature 98 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 PRINTS Heat shock factor (HSF) domain signature 136 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 PRINTS Heat shock factor (HSF) domain signature 149 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g0370 418 SUPERFAMILY "Winged helix" DNA-binding domain 94 187 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0370 Psa-Chr4 22294687 22296584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0370 84 327 HSF AT2G26150 48.016 6.63e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa4g0370 HSF_DNA-bind 4.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0370 K09419 - gmx:100818430 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0370 4 22294687 22296584 Psa4g0370 4 22294687 22296584 ECH