Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0352 ATGGCCCCTAGAATCCTACTCTGCGGCGACGTTTTTGGCCGCCTAAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCGGCCGGTCCTTTCGACGCCCTCTTGTGCGTCGGCCAATTCTTCCCTGATTCACCGGAGCTGCTTGATGACTTCATGTCATACATTGAAGGCGGCTCTCACATTCCCCTCCCAACGTACTTCATCGGCGACTACGGTGTCGCCGCCCCTAAAGTTTTGATGGCGGCTACTAAGGATTCCGCCAACCGTGGTTTCAAGATGGACGGCTTCAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCAACCTCTTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTTTAGTGAAGATGATGTTGATGCTTTGCGTGCGATAGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAATGAATGGCCAAGTGGGGTTACAAATGGAGTAGCTGCTTCAGACATTCCTGCTGGATTCTCGGAATCTAGCGGCAGCGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATCTACTACGCCCGCGAACCATATTCCAATGTTGATGCCGTGCACATTACCCGTTTCATCGGGCTTGCATCTGTTGGAAATAGGGATAAGCAGAAATTTATTCATGCAGTTTCTCCAACACCTGCATCCACCATGTCTTCAACTGATATTGCCATGAAAACCACAAATACTACCTTATCACCATACACGTCCCCAAAGGAAAAAGCTTCTCCTAATGACACCGCAAAGAGATCTGGTGACTCTGATTCTCAACATTGGAGATATGATGTTTCGCAAAAACGACAGAAACATGAAACTGGAGATAAGTTATGTTTCAAATTTGTATCTTCTGGCTCTTGTCTACGGGGAGAGACATGCAATTTTCGACATGACACAGATGCAAGGGAGCACTGTTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAAGCCTGGATCAGAAAATACAAGGTCTAGCAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTATCTAGCACTGGCTAAAGGTCCACTTGTGGAAGATCATGTGCTGATAGTACCTGTTGAGCATATGCCAAATACTTTATCTTTGTCTTCTGAATCTGAAGCTGAGCTCTTACGATTTCAGAACAGTCTAAAGAGATGTTTCAAGAACCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGCGGCACTCATGCCAATCTTCAGGTCATTCCCATTCCCTCTTCCAAAGCAGTTATGATTGAAAAAGCATTCAACTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGTGAAAAAATGTAAGCATTAA 1545 0.4421 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDDFMSYIEGGSHIPLPTYFIGDYGVAAPKVLMAATKDSANRGFKMDGFKVCDNLYWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTFSEDDVDALRAIAEEPGVVDLFLTNEWPSGVTNGVAASDIPAGFSESSGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHITRFIGLASVGNRDKQKFIHAVSPTPASTMSSTDIAMKTTNTTLSPYTSPKEKASPNDTAKRSGDSDSQHWRYDVSQKRQKHETGDKLCFKFVSSGSCLRGETCNFRHDTDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKHPSRKPGSENTRSSRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESEAELLRFQNSLKRCFKNQEKEVIFFEWASIRGTHANLQVIPIPSSKAVMIEKAFNLAAQKLGFEFVVKKCKH* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0352 514 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 510 IPR040194 -
Psa4g0352 514 MobiDBLite consensus disorder prediction 262 276 - -
Psa4g0352 514 CDD MPP_CWF19_N 6 232 - -
Psa4g0352 514 SUPERFAMILY HIT-like 388 485 IPR036265 -
Psa4g0352 514 SUPERFAMILY CCCH zinc finger 341 366 IPR036855 GO:0046872
Psa4g0352 514 MobiDBLite consensus disorder prediction 277 300 - -
Psa4g0352 514 Gene3D - 383 505 IPR036265 -
Psa4g0352 514 MobiDBLite consensus disorder prediction 262 300 - -
Psa4g0352 514 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Psa4g0352 514 ProSiteProfiles Zinc finger C3H1-type profile. 342 365 IPR000571 GO:0046872
Psa4g0352 514 PANTHER CWF19-LIKE PROTEIN 1 1 510 - -
Psa4g0352 514 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Psa4g0352 514 Pfam Protein similar to CwfJ C-terminus 1 382 496 IPR006768 -
Psa4g0352 514 Gene3D - 294 367 - -
Psa4g0352 514 SMART c3hfinal6 307 332 IPR000571 GO:0046872
Psa4g0352 514 SMART c3hfinal6 339 364 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g0352 CwfJ_C_1 3.1e-40 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0352 K24939 - gmx:100782106 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0352 4 21191722 21197915 Psa4g0352 4 21191722 21197915 ECH