Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0341 ATGTTACCACCACCTTATCACCTTATGCCTCTAGATCTTAATCAAGATCAAAACCATAATCATCTTTCTTCTTCTTCTTCTTCATTTTCTTCTCCATCATCATCTTATCCTAACCCGCCGGAACAAGTTCGACAAGAACCGTCTTATTACTTCGAAACAAAGCATGATCCTGAAGAGGTTGAGAAGACTATTCCATCAAGTGGATCATGGAATTCTTCAACTCCAGAAAACCATGAGAGCGGTAGAATTAAACACAAGCTTACAATTCGTTGGAAGAAAGAAGAAACTAGTACCGACGAAACTCGTAATATTCGAGCTGATGATGATCAAGAGGATGGTGCTTCAATGAAGTGGATGTCATCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCCTCAAACCGGTGATATTAAGCCGATTAAGTATGAAGATCACCAACAACAAGTTACCGATAACAGCAGCAACAACAGCAACAATAATTACTCGACTCATCTCAGCTATAATAATAGCCCTACTATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCGTGTGGGATTAGACAAAGGAAGGCGAGGCGCGCGATGGCATTGGCTGCCGCGTCTGGAAACGGAACAACAATTGCTGATCACGAGACATCTTGTGCGAAGAAGAGAAAAAAGCTGCAGAAGAAGAAGGAGAATAAGTCCAAAATTGAGTTTGAATGTTCAGCGCATATGAAAAAGAAACGCAAGATGGAAGCAACAAAAGCGTCTCAAATTAGTGGAAACAAGTTCATCAGTTTCGAGGATTTGAGATTAAGCTTGAGCCAGAATTTGTCTGTTCAACAAGTTTTTCCTCAGGATGAGAAGGAAGCTGCGATCCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTGA 957 0.4148 MLPPPYHLMPLDLNQDQNHNHLSSSSSSFSSPSSSYPNPPEQVRQEPSYYFETKHDPEEVEKTIPSSGSWNSSTPENHESGRIKHKLTIRWKKEETSTDETRNIRADDDQEDGASMKWMSSKMRIMKKMMVSDPQTGDIKPIKYEDHQQQVTDNSSNNSNNNYSTHLSYNNSPTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMALAAASGNGTTIADHETSCAKKRKKLQKKKENKSKIEFECSAHMKKKRKMEATKASQISGNKFISFEDLRLSLSQNLSVQQVFPQDEKEAAILLMALSYGLVHG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0341 318 MobiDBLite consensus disorder prediction 13 42 - -
Psa4g0341 318 ProSiteProfiles GATA-type zinc finger domain profile. 176 208 IPR000679 GO:0006355|GO:0043565
Psa4g0341 318 Coils Coil 226 246 - -
Psa4g0341 318 Gene3D - 174 218 IPR013088 GO:0006355|GO:0008270
Psa4g0341 318 CDD ZnF_GATA 177 207 IPR000679 GO:0006355|GO:0043565
Psa4g0341 318 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
Psa4g0341 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 212 - -
Psa4g0341 318 MobiDBLite consensus disorder prediction 48 62 - -
Psa4g0341 318 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 318 - -
Psa4g0341 318 MobiDBLite consensus disorder prediction 1 83 - -
Psa4g0341 318 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Psa4g0341 318 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 6 318 - -
Psa4g0341 318 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0341 Psa-Chr4 20764751 20766451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0341 86 318 C2C2-Gata Transcription Factor Family AT4G26150 42.105 2.99e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa4g0341 GATA 5.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0341 - - mtr:MTR_4g126350 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0341 4 20764751 20766451 Psa4g0341 4 20764751 20766451 ECH
Psa4g0341 4 20764751 20766451 Psa1g3214 1 282726247 282727309 PCT