Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0333 ATGGATGAAGAGGAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCTGATAATCTACCTTGTGTTGCCATTGCATATAGACTACTAGATGAAACGGAAAACATTCCAACCAGCGAAGAAGAACTTGCTCGCTGGTCATTACCAGAGGACGATCTTGTTTTACTAGCTATCGTTGGCCTGAAGGATCCTTGTCGACCTGGTGTTAAAGATGCAGTGCGCCTTTGCCAAAAAGCTGGAGTTAGGATACAGGTTGTTAAATGGGGGCAACCTTTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAACGTCATTGCTTCATTTTCCACCGGTGATCTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGACACTCTTGGAGCACTAGTTCTGGCGACTGAATCACCAACAGATCACCTTATGGATCAGCTCCCAGTCGGCAGGAGAGATCCTCTTGTAACAATATTATGTAGGAACATAATGAGTCTAAGGCACGAGATCAACACCTATGCAGTCAAAGTGAAGAATACTATAATATTCAATGCATTTGTTCTATGTCGAGTATTTAATGAATTCAACATTTTCAAGGGGGTTACGAAAAACTACCTATTTATGGGGATAGTGGGATTAGCTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTGGCTCATATGTGTTGTTATAGGATTTATCAGCTGGCCTCTTGCCGTGATTGGAAAACTGATACCAGTACCTGCGACTCCTATGAGTAA 822 0.4002 MDEEEMTVLRNVIEDMAADNLPCVAIAYRLLDETENIPTSEEELARWSLPEDDLVLLAIVGLKDPCRPGVKDAVRLCQKAGVRIQVVKWGQPLYANIQKFIQFQLTINIAALVINVIASFSTGDLPLNTVQLLWVNLIMDTLGALVLATESPTDHLMDQLPVGRRDPLVTILCRNIMSLRHEINTYAVKVKNTIIFNAFVLCRVFNEFNIFKGVTKNYLFMGIVGLAIVIQIVIIEFLGNFTKTVAHMCCYRIYQLASCRDWKTDTSTCDSYE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0333 273 SUPERFAMILY Calcium ATPase, transmembrane domain M 90 246 IPR023298 -
Psa4g0333 273 PANTHER CALCIUM-TRANSPORTING ATPASE 2 87 - -
Psa4g0333 273 PANTHER CALCIUM-TRANSPORTING ATPASE 84 246 - -
Psa4g0333 273 PANTHER CATION TRANSPORTING ATPASE 84 246 - -
Psa4g0333 273 PANTHER CATION TRANSPORTING ATPASE 2 87 - -
Psa4g0333 273 Gene3D - 66 85 IPR023214 -
Psa4g0333 273 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 70 IPR023299 GO:0000166
Psa4g0333 273 Pfam Cation transporting ATPase, C-terminus 125 171 IPR006068 -
Psa4g0333 273 Gene3D - 2 65 IPR023299 GO:0000166
Psa4g0333 273 Gene3D - 86 177 - -
Psa4g0333 273 Gene3D - 178 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0333 Psa-Chr4 20394244 20396201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0333 1 87 Primary Pumps ATPases AT5G57110 57.471 6.14e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0333 K01537 - lja:Lj4g3v2139630.4 236.498