Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0326 ATGGAAGATATCAGCGATGAAGAATGCAACACAGGTTTATATCTTGGATTGGGAATCAAAAAGGAGAAGAAGAAGCAGAAATTAGTGAATAAGCCTTGTTTCGACCTAGCTTTCGAGCTTTGTCCAAAAAATGAAGCCATCAAAGTACACAATAGTCATATCAATAACAACAGCAAAGGTGAGAGATTCAGTTTGGAGTATTATCCCAATGCAACAACATGCAGCACCGATTCCGATAACAACAACGCCGATCGGAGAAAGAAACTCCGGCTGACAAAGGAACAATCCGCCATGCTTGAAAACACCTTCAAGCTCCATAACACTCTTAATCCGGTGCAGAAAAAGTTACTTGCTGATCAATTGAAATTAAAGACCAGGCAAATAGAAGTTTGGTTTCAGAACAGGAGAGCGAGGACGAAGCTGAAGCAAACAGAGATAGATTGCGAGTTGTTGAAAAAACAATGTCAAAATCTAAGTGATGAGAATAAGAGATTGAAGAAAGAGTTGCAGGAACTGAAAGTAAGACAATCTCCATTATGCCCTCAACGTTTATCAAAACCTGTTTGTTCTTCCTGCGACCAGAAACTCTTGAAGCGCAATGAAGACAACAACAATTAA 618 0.3948 MEDISDEECNTGLYLGLGIKKEKKKQKLVNKPCFDLAFELCPKNEAIKVHNSHINNNSKGERFSLEYYPNATTCSTDSDNNNADRRKKLRLTKEQSAMLENTFKLHNTLNPVQKKLLADQLKLKTRQIEVWFQNRRARTKLKQTEIDCELLKKQCQNLSDENKRLKKELQELKVRQSPLCPQRLSKPVCSSCDQKLLKRNEDNNN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0326 205 CDD homeodomain 85 143 IPR001356 GO:0003677
Psa4g0326 205 SMART halz 142 187 IPR003106 GO:0006355|GO:0043565
Psa4g0326 205 Coils Coil 134 175 - -
Psa4g0326 205 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Psa4g0326 205 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Psa4g0326 205 SMART HOX_1 84 146 IPR001356 GO:0003677
Psa4g0326 205 Pfam Homeobox associated leucine zipper 142 173 IPR003106 GO:0006355|GO:0043565
Psa4g0326 205 PANTHER - 20 200 - -
Psa4g0326 205 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Psa4g0326 205 Gene3D - 77 147 - -
Psa4g0326 205 SUPERFAMILY Homeodomain-like 70 143 IPR009057 -
Psa4g0326 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 20 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0326 Psa-Chr4 20241760 20243327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0326 72 174 Homeobox Transcription Factor Family AT4G37790 65.421 6.29e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g0326 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0326 K09338 - gmx:100812222 208.764