Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0321 ATGGGGAACTGTTGCTGTTGGGGTCTTCAACCTACAGGTGATCGTCCAGCTGACACTAACAATCAATCAGGGAGACTTCCATTCTCTTTTGGTCTCAGCAACTTAGGATTGATAACAAATGGCAATTCCACTTCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGCAGACTATTTAGTAGTAGTAATAATCACTCAACAGGAAATAATACAAGTACCTCCTTTTGGGGCTCTGAGAATAGCCAGATCTCTCGAGTAAGAGAAGATGAGGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGCAGAACTGAAAGCAGCCACTAGAAATTTTCGTCCAGATACTTTATTAGGAGAGGGTGGGTTTGGTAGAGTATACAAGGGTTTGTTTAAGGGTTTGTTTAAGGAGAGAGCAACATCAAAAAGAGACGTGGATTCAACTATTGCCATAAAAAAATTGAATTCTCACAGCACGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTCTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGACGTGAGGATGGTGAGTTATTTCTGGTGTATGAATTTTTGCACCGTGGAAGCTTGGACAACCACCTATTTGGAAGAGGTTCAAATGTTCGTCCACTTTCATGGGACAGAAGGCTGAAAATTATGATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCCTTGGAGAAGAAAATTATATACAGAGATCTCAAACCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAGATCTGTTCCTTCTGATGACCGCACTCACGTATCAACACAGGTTGTGGGAACATGTGGCTATGCCGCCCCGGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATACTAACCGGTAAGCGGATAGGCGAGATAATACGCCTTAGCGAGCCAAAGTCCCTACGTGATTGGCTCAAATCAAACCTATTAAGTAGAGCAAAATCCAGAAGCAACATGGACGCAAAATTGGAAGGAAGGTATCCACCGAACTTAGCTTCACAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAGCCCAAAGTTAGGCCATCAATGAAGGAAGTCCTCGAAACATTAGAAAGTATTGAAGCAGCCAATGAGAAACCAGCTGATAATATAAAGAGGACTACAAATTCCAAGGCAGCTCAGCTACATGGCCAGCCAGATGGTGGTTAA 1305 0.4284 MGNCCCWGLQPTGDRPADTNNQSGRLPFSFGLSNLGLITNGNSTSLGRSSNSGGNSRLFSSSNNHSTGNNTSTSFWGSENSQISRVREDEEFPYGHILDAANLKVFTLAELKAATRNFRPDTLLGEGGFGRVYKGLFKGLFKERATSKRDVDSTIAIKKLNSHSTQGFAEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSNVRPLSWDRRLKIMIGAARGLNFLHSLEKKIIYRDLKPSNILLDKAYTAKLSDFGLARSVPSDDRTHVSTQVVGTCGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRIGEIIRLSEPKSLRDWLKSNLLSRAKSRSNMDAKLEGRYPPNLASQVAQLALKCIQTEPKVRPSMKEVLETLESIEAANEKPADNIKRTTNSKAAQLHGQPDGG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0321 434 MobiDBLite consensus disorder prediction 409 434 - -
Psa4g0321 434 ProSiteProfiles Protein kinase domain profile. 118 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0321 434 Gene3D Transferase(Phosphotransferase) domain 1 206 428 - -
Psa4g0321 434 SMART serkin_6 118 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0321 434 Gene3D Phosphorylase Kinase; domain 1 102 205 - -
Psa4g0321 434 PANTHER OS01G0588500 PROTEIN-RELATED 16 434 - -
Psa4g0321 434 SUPERFAMILY Protein kinase-like (PK-like) 95 402 IPR011009 -
Psa4g0321 434 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 16 434 - -
Psa4g0321 434 MobiDBLite consensus disorder prediction 46 76 - -
Psa4g0321 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Psa4g0321 434 Pfam Protein tyrosine and serine/threonine kinase 122 402 IPR001245 GO:0004672|GO:0006468
Psa4g0321 434 CDD STKc_IRAK 124 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0321 Psa-Chr4 20060105 20065549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0321 104 402 Glycoside Hydrolase AT3G07070 42.667 5.88e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g0321 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0321 - - gmx:100813304 593.578