Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0316 ATGGTTGTAGATCCGGTTATGATTCCCAAGATGAGGCTCGAAGAACAGATTGCTATACAAGAAGCTGCTTCTGCTGGATTGAAAAGCATGGAGCATCTCATTCGAGTGCTTTCTTCTCAAACTTCATCTTCTTCCTCAAATCAACGTAACCGTTTAGATCTTGATTGCACAGAAATAACTGATTTCACTGTTTCTAAGTTCAAACAGGTTATTAATTTGTTGAATCGTACCGGTCACGCTCGTTTTCGTCGTGCACCTTGTTTGCAATCTCAACCGAGATCTGAGAAATTGAATCTTCAACAGCCACAGTCAATCACTCTTGATTTCGCAAAACAGATTCAAGTAGTTAAGTCTAATCCAAGTCCAAATCCAAATCCAAATCCAAATCCGAATTTGATGACTAAGTCTAAACCCAACCCTAATCCGTCTGCCGATTTATCTGTTTCTCAATACTCTAAACCCAAGGAAGCATTCAGTATCTCAGCCACTAGTTCTTCCTTTCTTTCCACCATTACCGGAGACGGAAGCGTTTCCGATGGTAAAATAGCTCCTATCATTTCCTCTGGAAAGCCTCCTCTTGCTTCATCTCACCGGAAAAGGTGTCATGAAGCAACCGTCTCCGGTGCAGCTTCCGGTAAAGTATCATCATCTGGTCACTGCCATTGCTCTAAGAGAAGGAAATCTCGTGTGAGGAGAACAATTCGTGTTCCGGCGATAAGTACTAAGGTTGCTGATATTCCGGCAGACGAATTTTCATGGAGGAAATACGGTCAGAAACCTATTAAAGGTTCACCTTACCCACGTGGTTACTACAAGTGCAGTAGCTTTAAAGGGTGTCCGGCGAGGAAGCATGTGGAAAGGGCGCAAGATGATCCCAATATGCTTCTTGTGACCTACGAGGGAGAGCACCGACACCTGCCAACCTTCGGAACCGGTGCCGGATTTACATCTCAGGCTCACTAA 963 0.4413 MVVDPVMIPKMRLEEQIAIQEAASAGLKSMEHLIRVLSSQTSSSSSNQRNRLDLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPCLQSQPRSEKLNLQQPQSITLDFAKQIQVVKSNPSPNPNPNPNPNLMTKSKPNPNPSADLSVSQYSKPKEAFSISATSSSFLSTITGDGSVSDGKIAPIISSGKPPLASSHRKRCHEATVSGAASGKVSSSGHCHCSKRRKSRVRRTIRVPAISTKVADIPADEFSWRKYGQKPIKGSPYPRGYYKCSSFKGCPARKHVERAQDDPNMLLVTYEGEHRHLPTFGTGAGFTSQAH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0316 320 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 317 - -
Psa4g0316 320 Gene3D WRKY domain 230 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g0316 320 SUPERFAMILY WRKY DNA-binding domain 244 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g0316 320 ProSiteProfiles WRKY domain profile. 242 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g0316 320 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g0316 320 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g0316 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 317 IPR044810 GO:0003700
Psa4g0316 320 MobiDBLite consensus disorder prediction 207 227 - -
Psa4g0316 320 Pfam Plant zinc cluster domain 198 245 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0316 Psa-Chr4 19809027 19811107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0316 1 305 WRKY Transcription Factor Family AT2G24570 51.632 4.66e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa4g0316 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0316 - - gmx:732587 381.333