Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0306 ATGGACTCATCATCCTCCTCTTCACCCCCCACAAACGCTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCTACTCCTTCACACTCTCTCTTCCACTCCTTCACCCCTTTTCCTCCCCCAACAGTACCATCTCTCACCCTCGACACATCGCCGGAGCCAACTCACACAAGAACCACCAACCTCTCCATATTCACCGGCGGACACAAGCTCGAAAACTTTCTAGGAAACTCCACCGCCACCACATATGCACCCACACAGCTTCACCATCTTCCCACCGACATATACGACTCCGAGCTGAAAAAAACAATAGCCGCTTGCTTCCCTCATGGCTACCCAACCGAACCAAACTCCGAACCTCCCAAACCTTCTCCTAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATTTACCGTGGCGTCACCCGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAAGTAGGAAAGGAAGACAAGTTTATTTAGGTGGTTATGATAAGGAAGAAAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACTACAAACTTTCCGATTTCCAACTATGAGAAAGAGCTTGATGGCATGAAGAACATGACTAGGCAAGAATTTGTTGCTTCTCTAAGAAGGAAGAGTAGTGGTTTTTCAAGAGGAGCATCAATTTACCGAGGAGTAACGAGACACCACCAGCATGGTCGATGGCAGGCAAGGATAGGGAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACACAAGAAGAAGCTGCTGAAGCTTATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTTACAAACTTCGACATGACTCGCTACGACGTAAAAAGCATCGCAAATAGTTCTCTTCCCATAGGCGGTTTATCGAATAAAAACAACAAATTTTCTACTGATTCTTTATCCGAAAGCAAAGGTCTCGAAGTCGCGAGTATATCAGATGAAAGAAATCAACCAACACCATTTACAATATCACAACAACCTTCAAGTTCTACCTTAAGTTTCGCCGTTCCGATTAAACAAGATCCTTCTTCAGATTACTGGTCCAATATTCTTGGATTCCATAGTAATAATAATCCTAGTCATGTTGTGGTTCCATCTACCACACCCTTCAACATGGATTTTTCTTCTCATGCAACACCTTCGAGTACAAACAGTGATAACAATGGAGGTTTCTTCAGTGGATTTGTTCAGCATCAACAAGATGGAAATAATGGAAGCAGTTCTTCATCTTCATCATCAACATCATCATCTTCAACAAGTTCAATTCCATTTGCTACACCAATATTTTCTTTAAGTAGTACAAATAGTTATGGAAATAACTGGATTAATAATGGACACGCATTCCAAACACATGCAAAACCAAGTCTGTTTCAAACACCAATATTCGGAATGGAATGA 1491 0.4326 MDSSSSSSPPTNANNTSLAFSLSNHFPTPSHSLFHSFTPFPPPTVPSLTLDTSPEPTHTRTTNLSIFTGGHKLENFLGNSTATTYAPTQLHHLPTDIYDSELKKTIAACFPHGYPTEPNSEPPKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDGMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKSIANSSLPIGGLSNKNNKFSTDSLSESKGLEVASISDERNQPTPFTISQQPSSSTLSFAVPIKQDPSSDYWSNILGFHSNNNPSHVVVPSTTPFNMDFSSHATPSSTNSDNNGGFFSGFVQHQQDGNNGSSSSSSSSTSSSSTSSIPFATPIFSLSSTNSYGNNWINNGHAFQTHAKPSLFQTPIFGME* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0306 496 SMART rav1_2 140 212 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 SMART rav1_2 242 306 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 Gene3D AP2/ERF domain 140 208 IPR036955 GO:0003700|GO:0006355
Psa4g0306 496 Gene3D AP2/ERF domain 242 302 IPR036955 GO:0003700|GO:0006355
Psa4g0306 496 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 CDD AP2 241 300 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 CDD AP2 139 208 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 Pfam AP2 domain 242 292 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 Pfam AP2 domain 140 198 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 ProSiteProfiles AP2/ERF domain profile. 140 206 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 451 - -
Psa4g0306 496 ProSiteProfiles AP2/ERF domain profile. 242 300 IPR001471 GO:0003700|GO:0006355
Psa4g0306 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 117 451 - -
Psa4g0306 496 SUPERFAMILY DNA-binding domain 139 208 IPR016177 GO:0003677
Psa4g0306 496 MobiDBLite consensus disorder prediction 339 359 - -
Psa4g0306 496 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0306 Psa-Chr4 19136199 19139730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0306 96 496 AP2-EREBP Transcription Factor Family AT5G57390 56.813 1.03e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g0306 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0306 K09285 - gmx:100797828 637.876