Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0301 ATGAGGTATATTAGGACAAATAGCTTTAAGAGACTCTTCTCATTCAAAAAACGTTCTTTAGAGGAAGAAAAAGATAACACCTTGAAGATTCTTCCATATGAAGAACAACATTTTCAAAAACCCACTTGGAAATGTTTCTCCTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAACTCAGAAAACATTGTTGGAAAAGGAGGCTATGCAGAAGTTTACAAAGGAATATTGAAAAATGGTGAAGAAATTGCTGTGAAGAGATTAACAAGAACTTCAAGAGATGAGCGAAAAGAGAAAGAGTTTTTGACAGAGATTGGTACAATAGGACATGTTCGTCATACGAATGTCTTGTCTCTCCTAGGATGTTGTATTGACAATGGACTTTACTTTGTTTTTGAGTTATCCACAACAGGTTCTGTTTCATCTATTCTTCATGATGAAAAGTTGGCACCTTTAGATTGGAAAACTAGGTGTAAGATAGTTCTTGGGACGGCGCGTGGACTTCACTACTTGCATAAAGGTTGCAAGAGGAGAATAATTCATAGAGATATCAAAGCATCAAACATTTTATTGACCAAAGATTTTGAACCACAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGAACATTTGGACATTTGGCACCAGAATACTATTTGCATGGAGTGGTGGATGAGAAGACAGATGTGTTTGCATTTGGTGTTTTCTTGCTTGAAGTCATTTCTGGTAGGAAACCTGTTGATGGGTCTCACCAAAGCTTACATAGTTGGGCTAAACCAATTTTGAACAAGGAAGAGATAGAAGAGCTAGTAGATGCAAGGCTTGAAGGGAGTTATGATGTGAAACAATTAAAGAGATTTGCCTTTGCTGCCTCTCTTTGTATTAGGGCATCTTCCACTTGGAGACCTAACATGAGTGAGGTAATGGAAATAATAGAGGAGGGAGAGATTGATAAAGAGAAATGGAAAATGCCAGAGGAAGAAGAAGAACAAGAAGATGAATTCTGGGGGTTTGAGGATTTGGAATATGAATATGATACTTCATTTTCAATGTCTTTAATTGATTCAGTTGAAAGTATTTAG 1122 0.3681 MRYIRTNSFKRLFSFKKRSLEEEKDNTLKILPYEEQHFQKPTWKCFSYEELFDATNGFNSENIVGKGGYAEVYKGILKNGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHTNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKLAPLDWKTRCKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKEEIEELVDARLEGSYDVKQLKRFAFAASLCIRASSTWRPNMSEVMEIIEEGEIDKEKWKMPEEEEEQEDEFWGFEDLEYEYDTSFSMSLIDSVESI* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0301 373 PANTHER OS08G0249100 PROTEIN 16 355 - -
Psa4g0301 373 ProSiteProfiles Protein kinase domain profile. 58 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0301 373 SUPERFAMILY Protein kinase-like (PK-like) 34 325 IPR011009 -
Psa4g0301 373 Gene3D Transferase(Phosphotransferase) domain 1 136 350 - -
Psa4g0301 373 SMART serkin_6 58 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0301 373 Gene3D Phosphorylase Kinase; domain 1 17 133 - -
Psa4g0301 373 Pfam Protein tyrosine and serine/threonine kinase 61 323 IPR001245 GO:0004672|GO:0006468
Psa4g0301 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Psa4g0301 373 PANTHER OS04G0654600 PROTEIN 16 355 - -
Psa4g0301 373 ProSitePatterns Protein kinases ATP-binding region signature. 64 86 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0301 Psa-Chr4 18857426 18861850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0301 46 334 Trihelix Transcription Factor Family AT4G32710 45.183 5.78e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa4g0301 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0301 - - gmx:100819499 625.935