Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0297 ATGGCGGCCAACAAATCCATCACCCTCGAAGAAATCAAGAACGAGACCGTTGATCTGGAACATATTCCCGTTGAGGAAGTGTTTGAGCAATTGAAATGTACCAAAGAAGGTTTGTCCTCGGAGGAAGGAGCCAATCGGCTTCAGATATTTGGACCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAGGTTCTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTTTGATGGCAATTGGTCTTGCAAATGGTGACGGAAAGCCTCCGGATTGGCAAGATTTTGTCGGTATTGTTTGCTTGTTGGTGATCAACTCCACTATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCCGCTGCAGCCCTTATGGCTGGTCTTGCTCCTAAGACAAAGGTTCTTAGGGATGGTAAATGGTCTGAGCAGGAAGCTGCAATTTTAGTCCCTGGAGACATCATCAGCATCAAACTAGGTGATATTGTTCCAGCTGATGCTCGTCTTCTTGAAGGTGATCCTTTAAAGATTGATCAGTCTGCTTTGACTGGAGAATCACTTCCTGTGACTAGAAGTCCTGGGCAAGAAGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTTTTCGGGAAAGCAGCTCACCTTGTGGACAGTACAAACCAAGTTGGACATTTCCAGAAGGTGCTTACCGCAATTGGAAACTTCTGTATCTGTTCCATTGCAGTTGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCACCGCAAGTACAGAGACGGAATTGACAACCTTTTGGTCCTTTTGATCGGAGGAATTCCTATTGCTATGCCCACTGTGTTGTCTGTAACTATGGCCATTGGTTCACACAGGCTCTCTCAGCAAGGAGCTATTACCAAGCGTATGACTGCTATTGAAGAAATGGCTGGTATGGATGTACTTTGCAGTGACAAGACTGGTACACTTACACTTAACAAGCTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGAAAAGGGTGTGGACAAGGAACATGTTATGCTTCTTGCTGCAAGGGCTTCCAGGATTGAAAACCAGGATGCCATAGATGCCGCCATTGTTGGAACTCTAGCTGATCCAAAAGAGGCAAGGGCTGGAGTAAGAGAGATTCATTTCTTACCATTCAATCCCGTGGATAAGAGAACTGCCTTGACTTACATTGATAGCAATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCAGAGCAGATCATGAACCTGTGTAACCTTAGGGAAGATGCAAAGCGGAACATCCATGCTATTATTGACAAGTTTGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAGGAGGTTCCTGAGAAAACTAAAGAAAGTGCTGGTGGTCCTTGGCAGTTTGTTGGTTTGTTGTCACTGTTTGACCCACCTAGGCATGACAGTGCTGAAACTATTCGGAGAGCTCTTCATCTTGGTGTCAATGTTAAGATGATTACTGGTGATCAACTTGCCATAGCAAAGGAGACTGGGAGGAGACTTGGGATGGGAACTAATATGTACCCATCTGCTACCTTGCTTGGACAAGACAAAGATGCGAGTATTGCTGCACTTCCAGTTGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGGGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAAAGGAAACACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCAGCTTTGAAGAAGGCCGATATTGGAATCGCTGTTGCCGATGCTACGGATGCCGCAAGAGGTGCTTCTGATATTGTCCTCACAGAACCTGGATTGAGTGTTATCATCAGTGCAGTCTTAACTAGTAGGGCTATTTTCCAAAGGATGAAAAACTACACGATCTATGCAGTATCTATCACTATCCGTATAGTGTTTGGCTTCATGTTCATTGCACTGATATGGAAATTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATTCTTAATGATGGAACAATCATGACAATTTCAAAAGATAGGGTGGTTCCATCTCCCTTACCCGATAGCTGGAAATTGAATGAAATATTTGCTACTGGGATTGTTCTTGGAGGTTATTTAGCTCTGATGACCGTAATATTCTTCTGGGCAATTAAAGAAAATAAATTCTTCCCTGACAAATTTGGAGTTAGGCACCTGAATCATGATGAAATGATGTCTGCTTTGTATCTTCAAGTCAGTATAGTTAGCCAGGCTTTGATATTTGTGACCCGTTCTCGTGGTTGGTCGTTTCTTGAACGCCCTGGAGCCCTATTAGTCATTGCTTTCCTCATTGCTCAGCTGATTGCTACATTAATAGCAGTATATGCCAACTGGGGATTTGCAAAGGTACAGGGAATTGGTTGGGGTTGGGCAGGAGTAATCTGGCTCTACAGTATTGTCTTCTATATTCCACTCGACGTGATGAAATTTGCCATCCGCTACATATTGAGTGGCAAGGCTTGGAACAATCTCCTAGACAACAAGACTGCCTTCACCACCAAGAAAGACTACGGAAAAGAGGAGAGGGAAGCTCAATGGGCACACGCTCAGAGGACTCTACATGGACTTCAACCACCAGAGAGTTCTGGTATTTTCAACGAGAAGAGCAGTTACAGGGAACTCTCTGAGATTGCCGAGCAGGCCAAGAGAAGAGCCGAAGTTGCAAGGCTTCGCGAGCTGCACACACTGAAAGGGCATGTTGAGTCTGTGGTGAAGCTAAAAGGTTTGGACATTGATACCATCCAGCAGCACTACACTGTGTGA 2862 0.443 MAANKSITLEEIKNETVDLEHIPVEEVFEQLKCTKEGLSSEEGANRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAALMAIGLANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRSPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAIDAAIVGTLADPKEARAGVREIHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQIMNLCNLREDAKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESAGGPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVVPSPLPDSWKLNEIFATGIVLGGYLALMTVIFFWAIKENKFFPDKFGVRHLNHDEMMSALYLQVSIVSQALIFVTRSRGWSFLERPGALLVIAFLIAQLIATLIAVYANWGFAKVQGIGWGWAGVIWLYSIVFYIPLDVMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPESSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0297 953 Pfam E1-E2 ATPase 134 312 - -
Psa4g0297 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 849 IPR023298 -
Psa4g0297 953 Gene3D - 345 492 IPR023299 GO:0000166
Psa4g0297 953 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Psa4g0297 953 Gene3D - 330 629 IPR023214 -
Psa4g0297 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 567 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 353 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 Gene3D - 135 219 - -
Psa4g0297 953 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Psa4g0297 953 SUPERFAMILY HAD-like 329 639 IPR036412 -
Psa4g0297 953 SFLD p-type atpase 315 643 IPR044492 -
Psa4g0297 953 CDD P-type_ATPase_H 37 843 IPR006534 GO:0008553|GO:0016021|GO:0120029
Psa4g0297 953 Gene3D - 902 953 - -
Psa4g0297 953 PANTHER CALCIUM-TRANSPORTING ATPASE 4 933 - -
Psa4g0297 953 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Psa4g0297 953 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Psa4g0297 953 PANTHER PLASMA MEMBRANE ATPASE 4 933 - -
Psa4g0297 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Psa4g0297 953 Coils Coil 904 924 - -
Psa4g0297 953 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Psa4g0297 953 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g0297 953 SFLD C1.7: P-type atpase like 315 643 - -
Psa4g0297 953 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 37 808 IPR006534 GO:0008553|GO:0016021|GO:0120029
Psa4g0297 953 Gene3D - 97 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0297 Psa-Chr4 18680240 18686232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0297 9 953 Primary Pumps ATPases AT5G57350 85.428 0.0 1632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0297 K01535 - gmx:100816905 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0297 4 18680240 18686232 Psa1g3327 1 291843636 291851477 PCT