Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0288 ATGGGAAGGGCTCCATGTTGTGACAAGGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATACTACTCTCAAATCCTACATTGAAACAAATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGCGGAAAGAGTTGTAGACTTAGGTGGTTAAATTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGATATAAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGGAAGCGTAAACAATCGACGAATAATACTAATAACAACAGCTTGATGATGAACCAAAAGGACACAGATGAGAATTCTTATTCAAACTCATTGAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAAACCCTTCAAAACCCTTTTGGTTTTTACAATAATAACCTTTCTGTATGGCCAAAGTTGCATCCTTCTCAGGAAAAAATGATCCAAATTAGTCTCCAAAACTCTAATAACAACACTATGATGCAATTGCAAAGTGCTTTCCCTTCACCACAGGTTGAATGTTTGGAGAATATTAGCAATTCCGTTCCCTTCGACGCTTCTGAAAACAACGATAATAATAATAATAATCATTATGGTTCAATGGATGCTTCAAGTGTTGCACCAATTAGAGGACAAGGTGTTGAGAAGAGTAGTAATGAAGGAATTCAGCGACTGGAAAATGAGCTAGATGAGATTCTCAACAACAGAAACATTATTGCTACTACAATGGAAGATGAATTTGATTGTTTCAAAGAAATGAACAATAATGGCTCAAAGGATCAAAGCTTGATTTGGTGGTCAAATGAATCAGGTGATACTAAATCAGGATCGTCGAACTCGTGGGATTCGTCGACGAATCTTATTCAAGAAGGGATTTTCCAAGATTATGAACTAGGTTATGGTTTGTAA 1038 0.368 MGRAPCCDKANVKKGPWSPEEDTTLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSTNNTNNNSLMMNQKDTDENSYSNSLSSSALERLQLHMQLQTLQNPFGFYNNNLSVWPKLHPSQEKMIQISLQNSNNNTMMQLQSAFPSPQVECLENISNSVPFDASENNDNNNNNHYGSMDASSVAPIRGQGVEKSSNEGIQRLENELDEILNNRNIIATTMEDEFDCFKEMNNNGSKDQSLIWWSNESGDTKSGSSNSWDSSTNLIQEGIFQDYELGYGL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0288 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa4g0288 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Psa4g0288 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Psa4g0288 345 CDD SANT 16 62 IPR001005 -
Psa4g0288 345 CDD SANT 71 111 IPR001005 -
Psa4g0288 345 Coils Coil 258 285 - -
Psa4g0288 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Psa4g0288 345 SMART sant 13 64 IPR001005 -
Psa4g0288 345 SMART sant 67 115 IPR001005 -
Psa4g0288 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa4g0288 345 MobiDBLite consensus disorder prediction 119 141 - -
Psa4g0288 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa4g0288 345 PANTHER OS09G0431300 PROTEIN 1 303 - -
Psa4g0288 345 MobiDBLite consensus disorder prediction 122 141 - -
Psa4g0288 345 Gene3D - 7 68 - -
Psa4g0288 345 PANTHER OS09G0431300 PROTEIN 1 303 - -
Psa4g0288 345 Gene3D - 70 144 - -
Psa4g0288 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0288 Psa-Chr4 18026567 18028300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0288 1 185 MYB Transcription Factor Family AT5G57620 75.806 4.23e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g0288 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0288 K09422 - gmx:778083 411.764