Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0287 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGACTGTAATTGATTTTCGACAAAACTTTATTATCATGGATAGTCCCACGGCCGTTCGATCTCCAGCCACCACGGCTGGTTCGGGTTCCGGTTCGAACGAGGATGGTCGTCGTGTTAAATTTTTGTGTAGCTTTCTAGGTAGTATAATGCCTCGTCCGCAAGACGGGAAGTTGCGTTATGTTGGTGGTGAGACGAGGATTGTGAGTGTTTCGAGAGAGGTTAGCTTTGAGGAGTTGATGGGGAAGATGAGGGAGTTGTATGAAGGTGTTGCTGTGTTGAAGTATCAACAGCCTGATGAGGATCTTGATGCACTTGTGTCTGTTGTTAATGATGATGATGTGGTTAATATGATGGAGGAGTATGATAAGTTGGGTTCTGGAGATGGGTTTACTAGGCTTAGGATTTTCTTGTTTTCGCAATCGGAGCAAGATGGTTCGGCGCATTTTATTGATGGGGATGATTCGGAGAGGAGGTATGTGGATGCGTTGAATAGTTTGAATGATGCTTCTGAGCTTAGGAGGTTGCAACAAATGGAGTTTCCTATGATTGGAACGATTGAGGATATTCATGTGGGCGATCAGTTTGGGAATCCGATGGGTTTGGAAAATGGGATTCATAGCCAGAGAAGTGGGGAGCTAGGCATGTCGCCGTATAATTTGCATCATATACCGATTCAGCATCAGCAACCTATGGGACAGAGGTATAATGAAATTGATGCTCAGTGGAATCCTGGTTATTACTCTCCCAGGCATCATGGTCTTAGTCATCATGACTCTAGATCATCATTGGTTGATTATCCATCTTCTCCATCTGCAACGAGATACCGTGTGCCGTTTCCTGATATGCCAGATAAGGGAATCGATAGAGTGTCTGAAGACTATGCTCGGCATCACGGAAATCATCACCATCCTTTGTATGAGAATCAACCTCAGTATCCTGAGAATGTTGTGTGGCTGCCAACTGGAGCAGCACATGGTGATAAGTCTGGTTTTCAAGGCAACGTTCTTCATAGTTCCCATGGCCATGATGGTAATAATATATGTGAGCACTGTCGAATGAATTTTCAGAGAGCTCAACCTCATTTGGAGCATCCTAATATGCTTCCACCTGTATCCGTTCCATGTCCAGAATGCCACTCTAGCAGGGAAGCTCTCGCTGTGAATGTTGATGCCAAGTTACCACCTTCTATGTATCCCAATGATATTCAGAATCATGAGAGGGCTTGTGGTTTGCAGCATCAGGGTTCTGGAAGAGTGTCTGATCATTATGTTGGTGATGTTCCGATCATTAATTTCCCTCCTGGACATGGTAGTTTGATTGACGGGCATGCTCTTCCTTCCAGTCATGTTCACCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATGCCACATCTAAAAATTCCTTCATTGGAAGAATCTAGTGCGCAGTATGGAAATGTACCGTCTACTTATGGAGTAGATAATAATTACGCCATGCCTCGTGGACATGCACCTGGTTATACTCTTTGGACAAATGGTCCAACTCCAGTTCATATTGGACCACCATACGAGGCAACGACTCTACATCAGCCAGTTGATGGTGTGACAAATGCCGGACTGTTCAGAGGAGAGGGAAGACCAGGTTTTTTCATTGGAACGGATAGTCAAAGTCTTTGGGTTGATTCGTCACAGAAATTTTCTGGTCATGATGGGTCCGCCATCCCAGAATACCCTTATGCAAATGCTCCGAAGTTAAATCCAATTCCCACCGGTCAGGAAATTCAACACCCAATTATTCTAGATGCCACCATTCATCCCCCACAAGACGGAAATGCTGGTACTTGCGTGGAACCTGTGCAGCTGCAAAAATCTTCTCTTAATATCATTCACAATAACGAGGTTTTAATAAATGATGCTCATTTGACTGAAGTGATGGGTTTGCAATCTGTAAGTTTGCTTGGAGAAGGAAACAAGTCAAAATGTGAAGATAAGGTTGAAAACTTTAATGTGCAAAGGGTATCTTCTCGAGATCAAAATCAAATTGTTGAAGATGTATCCAACGCTGCTGCTGTTATTGTTGAGTCTAATAATTCATCCTTGAAACCTTCATCAGAGTTTGGATTTGTCGAGAAACTGGTTGATAAGGACTGTTCTGATCCCGGAGATTCTCAGCATTTAGTTGATCAATTCAATATCTTGCCTGAGTTAATTGCTTCTGTTAAAAAGGCTGCATTGGAATGTCATGATGAGGTGAAACCCACAGGTGAAGAGCATGCCGATTGTCAGATGAACAATTCAAATACCAGAGAAGAAACAGAAAAAGAAGTTGAGCCAGTGAATGCTCTTGGTGATTTAGAATTAGACACTGAAAATGACCATGTAGATACTTCTAAAATTGAGCCTACAAAAGCTGAGGCAGAAGCAATTGCTAGGGGATTGCAGACTATTAGAAATGATGATCTGGAGGAGATCCGCGAGCTAGGTTCTGGAACTTATGGGGCTGTTTATCATGGGAAATGGAAAGGTTCTGATGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGACCATCTGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCTAATGTTGTCTCCTTTTATGGTATTGTTCGTGATGGCCCTGACGGGTCTTTAGCAACAGTAACAGAGTTCATGGTTAATGGATCTCTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTAGTCAATATGAGAGATCCACAAAGGCCGGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTTAAACAACACACACTAGTGTCTGGAGGGGTACGAGGAACTTTGCCATGGATGGCACCCGAGCTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCGTTCGGGATAGTCATGTGGGAGTTACTCACCGGCGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACTCTTTACGTCCTCAAATCCCGACATGGTGCGATCCCGAGTGGAAGTCTCTAATGGAAAGCTCCTGGGCTTCTGATCCTGTAGATAGACCGTCATTTTCAGAAATTTCCAAGAAGCTGAGGACTATGGCTGCTTCAGTGAATGTGAAATAG 3327 0.4322 MCNKGFQCLSESETVIDFRQNFIIMDSPTAVRSPATTAGSGSGSNEDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSREVSFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSAHFIDGDDSERRYVDALNSLNDASELRRLQQMEFPMIGTIEDIHVGDQFGNPMGLENGIHSQRSGELGMSPYNLHHIPIQHQQPMGQRYNEIDAQWNPGYYSPRHHGLSHHDSRSSLVDYPSSPSATRYRVPFPDMPDKGIDRVSEDYARHHGNHHHPLYENQPQYPENVVWLPTGAAHGDKSGFQGNVLHSSHGHDGNNICEHCRMNFQRAQPHLEHPNMLPPVSVPCPECHSSREALAVNVDAKLPPSMYPNDIQNHERACGLQHQGSGRVSDHYVGDVPIINFPPGHGSLIDGHALPSSHVHQQVGPELGVELFPDQTMAAMPHLKIPSLEESSAQYGNVPSTYGVDNNYAMPRGHAPGYTLWTNGPTPVHIGPPYEATTLHQPVDGVTNAGLFRGEGRPGFFIGTDSQSLWVDSSQKFSGHDGSAIPEYPYANAPKLNPIPTGQEIQHPIILDATIHPPQDGNAGTCVEPVQLQKSSLNIIHNNEVLINDAHLTEVMGLQSVSLLGEGNKSKCEDKVENFNVQRVSSRDQNQIVEDVSNAAAVIVESNNSSLKPSSEFGFVEKLVDKDCSDPGDSQHLVDQFNILPELIASVKKAALECHDEVKPTGEEHADCQMNNSNTREETEKEVEPVNALGDLELDTENDHVDTSKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPTWCDPEWKSLMESSWASDPVDRPSFSEISKKLRTMAASVNVK* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0287 1108 SMART PB1_new 65 150 IPR000270 GO:0005515
Psa4g0287 1108 Gene3D Transferase(Phosphotransferase) domain 1 922 1107 - -
Psa4g0287 1108 ProSiteProfiles Protein kinase domain profile. 835 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0287 1108 PRINTS Tyrosine kinase catalytic domain signature 917 930 IPR001245 GO:0004672|GO:0006468
Psa4g0287 1108 PRINTS Tyrosine kinase catalytic domain signature 954 972 IPR001245 GO:0004672|GO:0006468
Psa4g0287 1108 PRINTS Tyrosine kinase catalytic domain signature 1025 1047 IPR001245 GO:0004672|GO:0006468
Psa4g0287 1108 PRINTS Tyrosine kinase catalytic domain signature 1069 1091 IPR001245 GO:0004672|GO:0006468
Psa4g0287 1108 PANTHER - 27 1108 - -
Psa4g0287 1108 SUPERFAMILY Protein kinase-like (PK-like) 827 1096 IPR011009 -
Psa4g0287 1108 Pfam Protein tyrosine and serine/threonine kinase 836 1098 IPR001245 GO:0004672|GO:0006468
Psa4g0287 1108 Gene3D Phosphorylase Kinase; domain 1 820 921 - -
Psa4g0287 1108 SUPERFAMILY CAD & PB1 domains 67 156 - -
Psa4g0287 1108 SMART serkin_6 835 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0287 1108 Gene3D - 69 153 - -
Psa4g0287 1108 CDD STKc_MAP3K-like 841 1098 - -
Psa4g0287 1108 Pfam PB1 domain 66 151 IPR000270 GO:0005515
Psa4g0287 1108 ProSitePatterns Protein kinases ATP-binding region signature. 841 862 IPR017441 GO:0005524
Psa4g0287 1108 CDD PB1_UP2 54 150 - -
Psa4g0287 1108 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 1108 - -
Psa4g0287 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0287 Psa-Chr4 17983811 17989738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0287 45 1108 MAP Kinase Kinase Kinase AT5G57610 52.793 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Psa4g0287 PK_Tyr_Ser-Thr 3.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0287 - - gmx:100779077 1639.01