Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0282 ATGGATGATGCCGCAAAACTAATAGATTGTTCTTACATTCAATCCTACAAAACGAACAGTGCGAAAGTGGTGTTTTTGAATCAAAGGCCTGCATACAAACGAGCCTGTGTCAGTTCGGCCAGTTTCACTAAACCTCCTCCAAATATTGCTCTCTGTATCTCAAGTCGTACCAATTCTGCGGAAGTGCTTATTATTAGAATCAAAAGCGGACAACGTGAAGGTGGAAAAGCATGTTCCAGCGACTATTGTGTTAAGGGTGGCATCTCATATGGAAATCCAGACCTGTCCTGTGGACTTGGTAATGGAAGTGAAAATAGAGGTGGAGGCGGTGGCAGAGTTTCAGTCGAAGTTTTCAGTAGGCATGATGAGCCCACAATTTATGTCCAGAGTGGCAGTAGCTTTGCTTGTCCTGAAAATGCAGGGGCAACCGGGACTCTTTACGATGAAGAATTCTACATCAGAAAGGCTATCGGTTCTCCATTGCTTCAATTTTCTTTGAGGCCTGCGCATGCAGTTATCATTGGTGAAAAGAGTTTTCATGGGATTTCCGGCATGTCGTTTGCTATCACCTTGGCAAGACCTGCATTGATGTTCAAAAAAAGGTCCGAGGATAACAAGTTCGATGGGGAACATGGTTGCTGGGGGAAACATTGGGAGGATAAGCTCTGGAGGATTGTCCATTCCTGGTCTTGCTTCACGTCTAAATTTAAATGGAAGCATCGGATCTGGCGGCTTAGGCGTGCAAGGATAAAATCGATTGATGAGTGGCGTGCTTCCTCAAGGATCTCCTCAGTACATCACTTGAACTCTATGGGAATGTTGAATGACTTGAATTCCAGTGACAGTTCACCCTTTGACCTCAATGACTTCCCTCAACTATCAAGTCGTCCTAGTTCTGTTGGAGGGCCTCAAGGACAGTTGGGCTCTTTACGAAAACAGGGTCTTATTCCTATTGTACAACAAAACCAAGATTTTAGCATTCAAAATGAAGACTTCCCAGCTTTACCAGGATACAAAGGTGGTAATGGAGAGTTTACTATGGATATGCATCAGAAAGAACAACTTCATGACAATGTTATGTCAATGATGCAGTCACAGCATTTCTCCATGGGGAGGTCTGCCGGTTTCAGCTTGGGAGGATCTTATTCATCACATCGTACTCAATAG 1167 0.4404 MDDAAKLIDCSYIQSYKTNSAKVVFLNQRPAYKRACVSSASFTKPPPNIALCISSRTNSAEVLIIRIKSGQREGGKACSSDYCVKGGISYGNPDLSCGLGNGSENRGGGGGRVSVEVFSRHDEPTIYVQSGSSFACPENAGATGTLYDEEFYIRKAIGSPLLQFSLRPAHAVIIGEKSFHGISGMSFAITLARPALMFKKRSEDNKFDGEHGCWGKHWEDKLWRIVHSWSCFTSKFKWKHRIWRLRRARIKSIDEWRASSRISSVHHLNSMGMLNDLNSSDSSPFDLNDFPQLSSRPSSVGGPQGQLGSLRKQGLIPIVQQNQDFSIQNEDFPALPGYKGGNGEFTMDMHQKEQLHDNVMSMMQSQHFSMGRSAGFSLGGSYSSHRTQ* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0282 388 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 261 388 - -
Psa4g0282 388 PANTHER CCR4 NOT-RELATED 261 388 IPR040168 GO:0030015
Psa4g0282 388 Pfam PLATZ transcription factor 2 39 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0282 Psa-Chr4 17763596 17766020 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Psa4g0282 PLATZ 8.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0282 K12605 - gmx:100806559 225.328