Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0280 ATGTCTCACAGAAACATTATTTCATGGAACACCGTGATTGATAGGTATCTTCACAACAACATGGTGGAACAAGCCAATAAGTTGTTTGATATGATGCCTGGGAGGGACAATTTTTTGTGGGCTTTGATGATTACTTGCTATACGCGTAAAGGGAAGCTTGTAAAGGATTTGGTTTCTTATAACTCTATGTTAGCTGTTTTCTTTGAAAAGATTTCAGATCCTAATGTTGTTTCTTGGGTTACCATCCTGTGTGGGTTTGCTAGACACAGAAAGATTTTAGAGGCTAGGAAACTCTTTGACAGAATGCCTTGTAAGAATGTGGTTTCTTGGAATGCGATGATTGCAACCTATGTCCAAGACTTACAAATTGATGAAGTTGTTAAGCTGTTCAAAGAAATGCCGTATGAAGATTGTGTCATTCTTTGCCCTCACTGTGTTTCTCCACATTCCTCTCACAGACTCTTACAGATTAGAAGATATGTGTATCACGATGTTGTAAGAATGGATGATGCCGCAAAACTAATATATTGTTCTTACATTCAATCCTACAAAGCAAACAGTGCGAAAGTGGTGTTTTTGAATCAAAGGCCTGCATACAAACGAGCCTGTGTCAGTTCGGCCAGTTTCACTGAACCTCCTCCAAATATTGCTCTCTGTATCTCAAGTCGTACCAATTCTGCGGTAATTGGACAGCAGTGTAACAACACACTTGGTCTTAGTCTTGGCACCGAACTGTCTTTAACTTCTTCCAAACACCTGAAATCAGTAAAAGGAGGGAAAACTTTAGCACAAAAGGTGAAATCCGTTGATCCTAGTGCGAAGCCGCCCATAGTTCCTAAAGAGAAGATATCTCACGCAACATTGGCATCGAAAATTGAGGTTCAACATCAAACTTCACAACCATCATTTGATAGTCTCAAGGCTTTTACAGGCTCCATCATAGAGCATGGCGAGAATTTAGAAAAAAAAGCTTCAAGAGAACAAAGTTCAACTTCACAGGGTTCCGGTTCTCAACCTTTAAAACCAGATGTGCTTGTCATTAGAATCAAAAGCGGACAAAGTGAAGGTGGAAAAGCATGTTCCAGCGACTATTGTATTAAGGGTGGCATCTCATATGGAAATCCAGACCTGTCCTGTGGACTTGGTGGAGGCGGTGGCAGAGTTTCAGTCGAATTTTTCAGTAGGCATGATGAGCCCACAATTTATGTCCACAGTGGCAGTAGCTTTGCTTGTCATGAAAATGCAGGGGCAGCCGGGACTCTTTACGATGCAGTTCCTCGAAGTCTTATAAAGAGATAA 1299 0.4103 MSHRNIISWNTVIDRYLHNNMVEQANKLFDMMPGRDNFLWALMITCYTRKGKLVKDLVSYNSMLAVFFEKISDPNVVSWVTILCGFARHRKILEARKLFDRMPCKNVVSWNAMIATYVQDLQIDEVVKLFKEMPYEDCVILCPHCVSPHSSHRLLQIRRYVYHDVVRMDDAAKLIYCSYIQSYKANSAKVVFLNQRPAYKRACVSSASFTEPPPNIALCISSRTNSAVIGQQCNNTLGLSLGTELSLTSSKHLKSVKGGKTLAQKVKSVDPSAKPPIVPKEKISHATLASKIEVQHQTSQPSFDSLKAFTGSIIEHGENLEKKASREQSSTSQGSGSQPLKPDVLVIRIKSGQSEGGKACSSDYCIKGGISYGNPDLSCGLGGGGGRVSVEFFSRHDEPTIYVHSGSSFACHENAGAAGTLYDAVPRSLIKR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0280 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Psa4g0280 432 Pfam PLATZ transcription factor 158 204 IPR006734 -
Psa4g0280 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Psa4g0280 432 PANTHER OS12G0289800 PROTEIN 1 62 - -
Psa4g0280 432 PANTHER OS12G0289800 PROTEIN 64 92 - -
Psa4g0280 432 PANTHER OS12G0289800 PROTEIN 91 137 - -
Psa4g0280 432 MobiDBLite consensus disorder prediction 320 343 - -
Psa4g0280 432 PANTHER OS07G0578800 PROTEIN-RELATED 64 92 IPR045215 GO:0003723|GO:0009451
Psa4g0280 432 PANTHER OS07G0578800 PROTEIN-RELATED 91 137 IPR045215 GO:0003723|GO:0009451
Psa4g0280 432 PANTHER OS07G0578800 PROTEIN-RELATED 1 62 IPR045215 GO:0003723|GO:0009451
Psa4g0280 432 Gene3D Tetratricopeptide repeat domain 70 149 IPR011990 GO:0005515
Psa4g0280 432 TIGRFAM PPR: pentatricopeptide repeat domain 7 33 IPR002885 -
Psa4g0280 432 TIGRFAM PPR: pentatricopeptide repeat domain 77 107 IPR002885 -
Psa4g0280 432 TIGRFAM PPR: pentatricopeptide repeat domain 108 134 IPR002885 -
Psa4g0280 432 Pfam PPR repeat 108 137 IPR002885 -
Psa4g0280 432 Pfam PPR repeat 7 35 IPR002885 -
Psa4g0280 432 Pfam PPR repeat 77 106 IPR002885 -
Psa4g0280 432 Gene3D Tetratricopeptide repeat domain 1 69 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0280 Psa-Chr4 17731257 17733524 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Psa4g0280 PLATZ 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0280 - - mtr:MTR_5g023040 167.162