Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0279 ATGACCAAGTCTTTGTGTTTTTCATGTTTACTAATAATTTTCCTTTTGGTTGCACAGATGCAAAAGGTGAGTCCTGCGTCAAACTATGCAGTGATTAAGTTGAAAGTTGGAGTTCCTAAGAAAGACGGTTTTACCCAATTTGTAAAAGTAGTTTGGAATTCTCGTGAAAACAAGTATAACGTGTCTGGATTTTGCATGGATATTTTCAATGCCGTTGTAAACAAGTTAACTTTCAAGGTTTCTCTACAAATTGAACCTTATGTTAATGAACTCAAATACAGTGCTGGATCATATGATTCACTTATCCAACAAGTCCCAGCAAAGTATGATGTTGTCGTGGGAGACATAACGATCGTGGCAAATCGTTCACAATTTGTAGATTTCACCCTACCATTTACAGAATCAGGAGTTAGAATGTTAGTTTCAGCTCAACATGGAAGGCACCAAACCATGTGGATATTTGTGCAACCCTTCAGCTGGGAACTTTGGTTGAGCATACTCTTAATCTCCATGCTTATAGGATCTGTCATTCTCATCATGGAAAGAAACGTAAAAACCCTACCCGATGATCGTCTCGACGAGCATTGTTCGTTTAAAAAACAGCTCACTGCAATAACCATGCTATGGTTTCCCTTATCGCAAGCTGTTCTTCCCGAAAGAAAAGTGGTTGCTAATAACTGCTCAATATTTGTGTTGATGGTTTGGCTGCTGTTGGCATTTGTACTAATGCAAAGCTATACTGCAAACTTGACATCAATATTGACCTTAGATCAGTTGCAACCTAGTTTTATGGACGTCAATGATCTACGAAATGGAAATCATTCAGTTGGATATCAAGCCGGTTCGTTCGTTTATAATTTATTAGTACAGCAGTTGAAGTTTAATCCATTGAAGTTGAAAGCATATACCAACATTTCTAGCTATCACCATGCTTTAAAGCTTGGAAGCGAAAATGGAGGTGTCACAGCAATATTTGGTGAAGTGCCCTACCTTAATGTGTTTATTCAAAAGGTTAAATCCAATTACGTTATAACTGGTCCTACCTATAGAACAGGTGGATTTGGTTTTGTATTTCCTTTAAATTCAAATCTTACTGCTCACTTTTCAAGAGCAATATTGAATGTGACACAAAATCATGAATTTATGGAAAAGATCGAGAAAAAGTATTTTGGAAAGAGTATTGAAGAGCTACAGCAGGAATCTTCACAAATATCTTCAGTTTCACGGAGTCTTACGCTTCACAGCTTTGCAGGGCTCTTTTTAATCACGGTCATTTTGACGTTATTGGCGTTATTTGTCTCTGAAAGTTTTTGTTTTTGGAAAAGATCCACTTCAATGATCAAAGAGTATTGTCGGAGATATTTCTTTCATTCACCGCTTCCTACTCAAGATATCAATCAACAAATGACTACCCCCTCTCGTCCTTGTTATAAGAAAAGTTTTACTTTTTAA 1452 0.3685 MTKSLCFSCLLIIFLLVAQMQKVSPASNYAVIKLKVGVPKKDGFTQFVKVVWNSRENKYNVSGFCMDIFNAVVNKLTFKVSLQIEPYVNELKYSAGSYDSLIQQVPAKYDVVVGDITIVANRSQFVDFTLPFTESGVRMLVSAQHGRHQTMWIFVQPFSWELWLSILLISMLIGSVILIMERNVKTLPDDRLDEHCSFKKQLTAITMLWFPLSQAVLPERKVVANNCSIFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFMDVNDLRNGNHSVGYQAGSFVYNLLVQQLKFNPLKLKAYTNISSYHHALKLGSENGGVTAIFGEVPYLNVFIQKVKSNYVITGPTYRTGGFGFVFPLNSNLTAHFSRAILNVTQNHEFMEKIEKKYFGKSIEELQQESSQISSVSRSLTLHSFAGLFLITVILTLLALFVSESFCFWKRSTSMIKEYCRRYFFHSPLPTQDINQQMTTPSRPCYKKSFTF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0279 483 Pfam Ligand-gated ion channel 393 425 IPR001320 GO:0015276|GO:0016020
Psa4g0279 483 Pfam Bacterial extracellular solute-binding proteins, family 3 56 392 IPR001638 -
Psa4g0279 483 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 463 - -
Psa4g0279 483 SMART GluR_14 33 392 IPR001320 GO:0015276|GO:0016020
Psa4g0279 483 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 463 - -
Psa4g0279 483 Gene3D - 315 399 - -
Psa4g0279 483 Gene3D - 27 150 - -
Psa4g0279 483 CDD GluR_Plant 33 390 - -
Psa4g0279 483 SUPERFAMILY Periplasmic binding protein-like II 3 393 - -
Psa4g0279 483 Gene3D - 151 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0279 Psa-Chr4 17712420 17714730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0279 33 433 Ion Channels AT5G11210 35.821 1.84e-78 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0279 K05387 - gmx:100811144 515.768