Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0273 ATGTCTCCTTCTCCTCCGCAGCAACAAGAATTCATATTCCGTTCTAAACTCCCAGACATTGAAATCCCAACGCATCTTCCATTACACTCTTACCTTTTCCAAAACCTCTCTCAATTCCACAACCGTCCATGTCTCATCAATGGCGACACCGGCGAAACTTTCTCTTACTCCGACGTCCACCTCACTGTCCGCAAAATCGCCTCCGGTTTAAACACAATCGGAATCAACCAAGGCGACGTCGTCATGATCGTCCTCCGTAACTCTCCGCAATTCGCACTCACTTTCCTCGGTGCATCGTATCGCGGCGCCGCCATCACCACTGCTAATCCTTTCTACACCTCATCGGAGCTAGCTAAACAAGCCACCGCAACGAAAACCAAACTCATCGTAACTCAATCCGCATACGTCAACAAAATCAAGGAGTTTGCAAAAATCAACAACATCAAAATCGTCTGCATTGATGATTCATCATCGCCGTCATCGTCAGAGGAGAAAGACGGTGTTGTGGATTTCTCTGTTTTAACAAATGCGGATGAAAATGAAGCACCGGAAGTTAAGATAAATCCTAACGACGTCGTTGCGTTACCGTTTTCTTCAGGAACTTCAGGACTTCCAAAAGGTGTTATGTTAACGCATGAAAATTTAGTTACAACAATAGCACAGTTAGTTGACGGTGAAAATCCTCACCAATACACTAACAGCGAGGACGTGTTACTCTGTGTGTTACCCATGTTTCATATCTATGCACTCAATTCAATTCTACTCTGTGGAATTCGTGCTGGTGCGGCTGTGTTAATTGTAGAGAAATTTGAGATTAAAACGGTTTTAGAACTGATTGAAAAGTATAAAGTGACGGTAGTGTCGTTTGTGCCTCCGATTGTTTTAGCGTTGGTGAAGAGTGGAGAGTCGCATCGATACGACTTGTCGACTATTAGGGTGATGATAACAGGTGCGGCACCCATGGGAATGGAACTTGAACAAGCTGTCAAGGATAGGATGCCACAAACCGTGCTTGGACAGGGATATGGGATGACAGAAGGAGGGCCACTTTCAATTAGTTTAGCTTTTGCAAAGGAACCATTTAAGACAAAACCCGGAGCATGTGGCACGGTCGTGAGAAACGCTGAGATGAAAATAGTCGACACAGAAACTGGTGTTTCTCTTCCAAGAAATAAAGCTGGTGAAATTTGCATCAGAGGCACAAAGGTTATGAAAGGATATCTAAATGATCTCGAGGCAACAAAGAAAACTATAGACAAAGATGGATGGCTACACACCGGTGACATTGGTTTCGTTGACGATGATGATGAACTTTTCATCGTTGATCGACTAAAGGAATTGATTAAATACAAAGGATTTCAAGTAGCTCCTGCTGAGCTCGAAGCATTGCTCATTGCTCATCCTAACATTTCTGAAGCTGCTGTTGTACCATTGAAAGATGAAGTTGCCGGAGAAATCCCAGTTGCATTTGTAGTTAGATCAAATGGTTCAAAGATCAGCGAGGATGAAATCAAGCAATACGTTTCGCAACAGGTTGTGTTTTACAAGAGAATCAACAGAGTTTACTTCACGGACGCTATTCCTAAAGCAGCTTCGGGTAAAATTCTACGAAAGGAATTAACTGCAAGACTTAACGAAGGACTAGTGGTGTGA 1653 0.4332 MSPSPPQQQEFIFRSKLPDIEIPTHLPLHSYLFQNLSQFHNRPCLINGDTGETFSYSDVHLTVRKIASGLNTIGINQGDVVMIVLRNSPQFALTFLGASYRGAAITTANPFYTSSELAKQATATKTKLIVTQSAYVNKIKEFAKINNIKIVCIDDSSSPSSSEEKDGVVDFSVLTNADENEAPEVKINPNDVVALPFSSGTSGLPKGVMLTHENLVTTIAQLVDGENPHQYTNSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVEKFEIKTVLELIEKYKVTVVSFVPPIVLALVKSGESHRYDLSTIRVMITGAAPMGMELEQAVKDRMPQTVLGQGYGMTEGGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGVSLPRNKAGEICIRGTKVMKGYLNDLEATKKTIDKDGWLHTGDIGFVDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISEAAVVPLKDEVAGEIPVAFVVRSNGSKISEDEIKQYVSQQVVFYKRINRVYFTDAIPKAASGKILRKELTARLNEGLVV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0273 550 Pfam AMP-binding enzyme 34 450 IPR000873 -
Psa4g0273 550 Gene3D - 445 547 IPR045851 -
Psa4g0273 550 CDD 4CL 22 540 - -
Psa4g0273 550 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Psa4g0273 550 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Psa4g0273 550 SUPERFAMILY Acetyl-CoA synthetase-like 7 546 - -
Psa4g0273 550 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 544 - -
Psa4g0273 550 Gene3D - 6 444 IPR042099 -
Psa4g0273 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0273 Psa-Chr4 17384233 17388365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0273 10 512 Monolignol Biosynthesis Gene Families AT1G51680 64.567 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0273 K01904 - gmx:548034 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0273 4 17384233 17388365 Psa4g0273 4 17384233 17388365 ECH