Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0271 ATGAATAATTTTCATCCTAATACTTCTCTTCACTTAATTAACCAACCACAAAATGAGAATATTCATCATCACCATCATCTGAATCTAGATCTTGTTCTTGAACCATCTTCTTCATCGTCATCATCCTCACCTATAAGTTCAACGGAGCAAAGGATATTCTCATGCAACTACTGTCAGAGAAAGTTTTACAGTTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAACTTGAAAGGACACTTGCCAAGAAGAGTAGAGAGATAACTTCAGCCATGCAATCTTATAATGAATTACCAGAACACCCTTCAAACTACAACACTACTTTTGCCCATGGAAATTCTCATCTTCACAATGACCATGGACAAGGAGGTCATTTTATGAGGTATGGTGGAAGAAAAGAATTTAGTTATGGTGGTAATTCTAATAAGGAAGGTGTCAGTTCTTCTTGGTCAAGGGGTTATAACACTCCTTCTGAACATGTTCAGGAAGATATTAACCAACTTGACTTGTCCTTAAGGCTTTGA 525 0.3733 MNNFHPNTSLHLINQPQNENIHHHHHLNLDLVLEPSSSSSSSSPISSTEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREITSAMQSYNELPEHPSNYNTTFAHGNSHLHNDHGQGGHFMRYGGRKEFSYGGNSNKEGVSSSWSRGYNTPSEHVQEDINQLDLSLRL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0271 174 PANTHER ZINC FINGER PROTEIN JAGGED 25 174 IPR045320 GO:0003700
Psa4g0271 174 SUPERFAMILY beta-beta-alpha zinc fingers 48 80 IPR036236 -
Psa4g0271 174 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Psa4g0271 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Psa4g0271 174 PANTHER ZINC FINGER PROTEIN 2 25 174 - -
Psa4g0271 174 Gene3D Classic Zinc Finger 34 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0271 Psa-Chr4 17165085 17166776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0271 3 174 C2H2 Transcription Factor Family AT5G57520 44.134 1.42e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0271 - - vra:106768043 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0271 4 17165085 17166776 Psa4g0271 4 17165085 17166776 ECH