Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0261 ATGGAACTTCCTTCACCTTCTACAATACTTATTGGTCTTTCCTTTGATTCAAATGATAGCAAGGAGCTTCTATCATGGACAATAAGAGTTCTAGCCAAACCAAATGATACTATTGTTGCACTGCATGTTCTTGTTGGTGAGAATATGAAGAAAAGTGTGTCTGTGAGAAGAAGACAATCACATCTTAGACAAGCAAAAGCATATGTTATATCTGTGCTCGGAGAATTCGCGCAGAGTTCTTGGTCTAAACAGATTAATTTGGAGGCTAAAGTGGTATTGAGTTCTACAATAGGTGATGGTCTAGTGAAGGAAGCCAAGTCAATTTCGGCCGATTTTCTTCTTCTTCGTGGAGCAAGAAACCGATCAAATAATATCGGAACCTCGAAAGGAATTACCAAGTATTGCTTTGATCATGTACATGGAAGTTGCACAATGGTCTCAGTTGGTAGAGAAATGAATGCACAGAACAGGTCACCAAGAACAGTACTAGACGGATTAGAGGGACAATCGAATAGCACAGAAGATGATACTTTTAGCACTCGAGCGTCGAGCGTGACATATACACCTTCATCGGATTCTAAGATTAAGAGAAAATCGAAGTTGAGAAAATCGCAATTCTCATTCAGGTTCATAATATCATTCCTCGGTTCACCATTCAGATTAAAGACGTTCAACGTGTCGAAAAATGATATACATCATCAACCTTTATTGAAGTGCTTCAGCTATGAAAATATTTGCAATGCTACTAATCACTTTCACCAAGATAATTTGGTTGGTAGAGGAGGGTACTCAGAAGTATATAAAGGCGATCTTTGCGATGGAGAAACCATTGCTGTGAAGAGGTTAGCCAAAGACAACAAAGATCCAAACAAGGAAAAAGAGTTTCTTATGGAGTTAGGTGTTATTGGACATGTCTGTCATTCGAATACGGCGACTTTATTAGGCTATTGCTTTGAAAATGGACTCTATCTCATTTTCAGTTATTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTAAAGCAGGAAATTCACTTGACTGGGCAATAAGGTACAAAATTGCTATTGGAGTTGCGAGAGGTCTCCACTATCTTCATAAATGTTGCAAACATCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACAGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTAATCCCAGTGGAGGGAACATTTGGATATTTAGCACCAGAGGTTTTTATGCATGGCATTGTGGATGAGAAAACTGATATTTTCGCATTTGGTGTTCTTCTTTTGGAGATTGTAACTGGAAGAAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTAATGGAATCAGGAGATATCGCTGAGCTGGCTGATCCAAAAATGGAAGGTAAATATGATACAGAAGAATTGCATAGGGTAATCCTAACAGCTTCATACTGTGTCAGACAAACTTCCACATGGCGTCCCGCCACGACCGAGGTGTTGGAGATGTTAACTAGTGGCCAACACTATAAAATCGGAAAAAGTCGGAGAATTCCGAAGTTCACTTCTGATGAATTAGATGATTACTCTATGGTTTTTGGATATGATGTACCTTCAGAAATATCTCTAGAGGATTATTTGTGA 1689 0.3908 MELPSPSTILIGLSFDSNDSKELLSWTIRVLAKPNDTIVALHVLVGENMKKSVSVRRRQSHLRQAKAYVISVLGEFAQSSWSKQINLEAKVVLSSTIGDGLVKEAKSISADFLLLRGARNRSNNIGTSKGITKYCFDHVHGSCTMVSVGREMNAQNRSPRTVLDGLEGQSNSTEDDTFSTRASSVTYTPSSDSKIKRKSKLRKSQFSFRFIISFLGSPFRLKTFNVSKNDIHHQPLLKCFSYENICNATNHFHQDNLVGRGGYSEVYKGDLCDGETIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHSNTATLLGYCFENGLYLIFSYSQNGNLSTALHGKAGNSLDWAIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKQNILLWAKPLMESGDIAELADPKMEGKYDTEELHRVILTASYCVRQTSTWRPATTEVLEMLTSGQHYKIGKSRRIPKFTSDELDDYSMVFGYDVPSEISLEDYL* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0261 562 PANTHER OS08G0249100 PROTEIN 7 552 - -
Psa4g0261 562 CDD USP_Like 8 146 - -
Psa4g0261 562 Gene3D Transferase(Phosphotransferase) domain 1 330 535 - -
Psa4g0261 562 SUPERFAMILY Protein kinase-like (PK-like) 233 519 IPR011009 -
Psa4g0261 562 ProSiteProfiles Protein kinase domain profile. 252 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0261 562 Gene3D Phosphorylase Kinase; domain 1 217 328 - -
Psa4g0261 562 MobiDBLite consensus disorder prediction 161 183 - -
Psa4g0261 562 PANTHER OS08G0249100 PROTEIN 7 552 - -
Psa4g0261 562 SMART serkin_6 252 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0261 562 Gene3D HUPs 3 146 IPR014729 -
Psa4g0261 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
Psa4g0261 562 Pfam Protein kinase domain 252 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0261 562 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 121 - -
Psa4g0261 562 ProSitePatterns Protein kinases ATP-binding region signature. 258 280 IPR017441 GO:0005524
Psa4g0261 562 Pfam Universal stress protein family 8 146 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0261 Psa-Chr4 16415789 16419668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0261 240 558 Trihelix Transcription Factor Family AT1G70460 39.466 1.69e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa4g0261 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0261 - - ccaj:109809416 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0261 4 16415789 16419668 Psa4g0261 4 16415789 16419668 ECH