Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0260 ATGAATTTAATAGGTAAAGCAGGAAATTCACTTGACTGGGCAATAAGGTACAAAATTGCTATTGGAGTTGCAAGAGGTCTCCACTATCTTCATAAATGTTGCAAACATCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATAAACCACAGATTACAGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGTTGTAATCCCAGTGGAGGGAACATTTGGATATTTAGCACCAAAGGTTTTTATACATGGCATTGTCGATGAGAAAACCGATATTTTCGCATTTGGTGTTCTTCTTTTGGAGATTGTAACTGGAAGAAGACCTGTTGATTCATCAAAGCAAAATATTCTCCTATGGGTAAATACTAAATTCGCCACTCATTTCATCCCTAATACCAATATAGCATCGACAATTCAATATCAGAGGATCGTGTCTGGTGTCTGTGTTTCATACTAG 486 0.3745 MNLIGKAGNSLDWAIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYKPQITDFGLAKWLPNKWTHHVVIPVEGTFGYLAPKVFIHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKQNILLWVNTKFATHFIPNTNIASTIQYQRIVSGVCVSY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0260 161 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0260 161 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Psa4g0260 161 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0260 161 PANTHER OS08G0249100 PROTEIN 3 132 - -
Psa4g0260 161 PANTHER OS08G0249100 PROTEIN 3 132 - -
Psa4g0260 161 Pfam Protein kinase domain 18 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0260 161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
Psa4g0260 161 SUPERFAMILY Protein kinase-like (PK-like) 6 139 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0260 Psa-Chr4 16406016 16406987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0260 11 130 Trihelix Transcription Factor Family AT1G26150 52.419 1.52e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa4g0260 Pkinase 7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0260 - - gmx:100787158 252.677