Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0250 ATGGGAAGAAGAACTTTTCTTCCATATAAAGATGAAACCTTTATGCCTCCATTAGCACAACCACCTTATTCTTTTCATTTTCATCCTAACCCATCACCATTTCCACCCATCACTGTTTCATCTCTTCGATCTGATAATTTCAGTCCAGGTGATAAATCATTGAAGGTTAGTCCAAGTATTCTTCTAATCATTATCATTCTAGCCATTGTTTTCTTCGTTTCTGGTTTACTTCATCTCCTAGTGAGGTTTCTATGGAGGCCTCAGGATAGAGACGCTGAGGATTTGGATGATGTTACTGCTCTTCAAGGGCAGTTGCAGCAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAGTCTTTCATTGATACTACTCTTCCTGTGTTTCTTTATAAGGCTATTATTGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCTTGAAGATAAGCTTAGGTTGTTGCCGAAATGTAGTCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGGTAATTTGCTTCATGATTTCAATGCGAACAATAGTTGTTCACCTATTGTTCTTGTTCTAGAATCTGGTAGTGATAGTTCAAGAGAAATTGTTCCAGAAAGAGATGCTACTGTTACTGCTACTGCTACGGCTAATACTGCTATAGGTACAGGTAGTAGTGTTCTTGGTAGGACTAGTTCTGTCATGACAACGGATTCGGTTCTTGGTTATCGCGGAGACAATGAATTCGGAGGTGATTCGGCTTCGGTTGAAAACATTTCTAAGCCGAATGTTGGAGTGGAGAAAGTTGTGACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGTGGAGGAGGAGGGGAAGGAAGTAGTAGCAACAATGTGGATGATAGGAGGTGTTTTTCGATGGGTTCGTTTGCTTATATTATGGATGAAACATCTTCGTTGCAGGTACCGATTAGAACGCCGATGAAGATGAAATCAAGCAAGAAGAAAACTGTTTTGCCTTTGATTCCCGGACGTAGGCCTGCAATGTCGGAATGTGATTGCGAATCAAGAAGGGATTTCAAGTTTGCAAGCTTCGATTCGACTAGAGGAGTAGTTGAGGATTTTGCAGGTATTGGAAAATGTCGAAAAGAGAGTTATTCTATATCGAAGATTTGGCTTAGAGGGAAGAAAGATAAGACTAATGGTGATGCTGCAGATTCATCTAGAAGAGCTGTTTCATCTAGGTTTGCATTACAAAGAACTGTTTCTGAGATGGATTTTGGAGGAAGTGAATTTGGTGGTTATGATGAAGAGAATCAAAGTTGTTATAGTATGGATTCATCTCAAGCTAGAGCACCTTCATTTGCTAGAAGGACTTTGATTTGGCTCACTGGAAGACAAAATAAGGTTGTTCATTCTTCAACTGCTTCTGTTTCTGCTTCTACTTCTACACTTTAG 1479 0.3955 MGRRTFLPYKDETFMPPLAQPPYSFHFHPNPSPFPPITVSSLRSDNFSPGDKSLKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQDRDAEDLDDVTALQGQLQQLFHLHDAGVDQSFIDTTLPVFLYKAIIGLKNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRGNLLHDFNANNSCSPIVLVLESGSDSSREIVPERDATVTATATANTAIGTGSSVLGRTSSVMTTDSVLGYRGDNEFGGDSASVENISKPNVGVEKVVTVKLGKYRNVDGGGGGGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKMKSSKKKTVLPLIPGRRPAMSECDCESRRDFKFASFDSTRGVVEDFAGIGKCRKESYSISKIWLRGKKDKTNGDAADSSRRAVSSRFALQRTVSEMDFGGSEFGGYDEENQSCYSMDSSQARAPSFARRTLIWLTGRQNKVVHSSTASVSASTSTL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0250 492 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 446 - -
Psa4g0250 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 191 IPR013083 -
Psa4g0250 492 Pfam Ring finger domain 141 184 IPR001841 -
Psa4g0250 492 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 18 446 - -
Psa4g0250 492 SUPERFAMILY RING/U-box 129 193 - -
Psa4g0250 492 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Psa4g0250 492 SMART ring_2 142 183 IPR001841 -
Psa4g0250 492 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0250 Psa-Chr4 14510290 14512918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0250 55 485 C3H Transcription Factor Family AT2G18650 46.916 1.42e-100 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0250 - - gmx:100812651 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0250 4 14510290 14512918 Psa4g0250 4 14510290 14512918 ECH