Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0241 ATGGCCAAAAAATCGCAGAAGCAAATCCAGAAAGACAATGTTAACAATGATGTGAATGCAAGTAATTCCGTTACGACAAAGACGAAACGCACCAGGAAGAGTGTCCCGAGAACTTCTCCGCCTCAACGCAGCTCGATTTATAGAGGAGTCACTAGACACCGGTGGACGGGTCGATATGAGGCTCATTTGTGGGACAAGAATTGTTGGAATGAGTCTCAGAACAAGAAAGGAAGACAAGTCTACCTTGGTGCTTATGATAATGAGGAAACAGCAGCACATGCTTATGATTTAGCTGCATTGAAATATTGGGGTCAAGATACAATTATTAATTTTCCGTTATCAAATTACCAGAAAGAACTTACAGAAATGGAGACTCAATCAAGGGAAGAGTATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCTAGAGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCACAATGGAAGATGGGAGGCTAGGATTGGAAAAGTTTTTGGCAATAAGTATCTTTATCTTGGAACTTATGCTACCCAAGAAGAAGCAGCTACAGCTTATGACATGGCTGCGATCGAATATCGTGGACTTAACGCGGTTACAAATTTCGATCTAAGCCGTTATATTAAGTGGCTTAAGCCCAACAAAAACAACAGTGAAAACAATGACAAGTCCAACATTAATCTTTGTCACATTAACTCTAACTATAGTACCAATGACACAAACTCTAATGAAGAATTGGAATTTACCTTAGACAATGAAATAGTATCACTCAATACTACTACTATTGATGAAACCACATTGGTTCAACCTCGACCAACTAGTGCCACGTCAGCCCTAGAGCTTCTTCTTCAATCATCTAAGTTTAAGGAAATGGTGGAAATGGCTTCTATGACATCCAATGTTTCAACAACGTTGGAGTCTGATCAACTGTCACAATGTGCATTTCCGGATGATATTCAAACTTATTTTGAGTATGAAGATTTCAGTGATACTATGATTGATGATCTCAACTCTATTGTGCCTATGTTTCATTGTGATGGCTTTGAGGGTGCTGAGATTTTATAG 1074 0.3873 MAKKSQKQIQKDNVNNDVNASNSVTTKTKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELTEMETQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNKNNSENNDKSNINLCHINSNYSTNDTNSNEELEFTLDNEIVSLNTTTIDETTLVQPRPTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLSQCAFPDDIQTYFEYEDFSDTMIDDLNSIVPMFHCDGFEGAEIL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0241 357 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Psa4g0241 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 339 - -
Psa4g0241 357 SUPERFAMILY DNA-binding domain 45 114 IPR016177 GO:0003677
Psa4g0241 357 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Psa4g0241 357 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Psa4g0241 357 MobiDBLite consensus disorder prediction 1 45 - -
Psa4g0241 357 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 339 - -
Psa4g0241 357 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 CDD AP2 45 114 IPR001471 GO:0003700|GO:0006355
Psa4g0241 357 MobiDBLite consensus disorder prediction 7 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0241 Psa-Chr4 12011339 12013753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0241 42 210 AP2-EREBP Transcription Factor Family AT5G57390 73.373 7.00e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g0241 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0241 K09285 - gmx:100793339 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0241 4 12011339 12013753 Psa4g0241 4 12011339 12013753 ECH