Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g0234 | ATGGAATTCAAATTCCGTGCCGTCGACAATAAAGAACCACCAACTACGTCGTTGCATTCTCTCCCTGATCGATCACTTCAGATGGAAGGAAGTTTTTCTGGCTTCCGAATGCCATTATCCGGCGAGGCGGCATTGCGACGGGAGATTGAGAAAGAGCTAATCCGTAGAGAAATTTTGCGGCGAAGTGAGTTGGAGGAGGAAGTGAGAAGGGAGCTTGCAATGGAGAAAGAATTCGGGATTTCAATACAGAGGCCACTCATGAGTATTCAGGGACTAATGTCTCATTGGTCGAATTCATCTGTGATGAACCCTGCTGCTGAACCACCGTCAATTTTGCCGCCTGCCGAAATCAACCCTTCTCCGGAGATCAGTGACAAGGGCAAAGTTATAGTGTTGGCTAAGCCGGATCCCAATCTCTTTAATGCAAAGCGAAAAGCAACGACACCTCTTGTTTCTGAAATTGAACCTCTTGCATTTAGTTCAAAGAAAAAATCGAAGGAGGAGTGGAGTTGTGCACTGTGTGAAATTAAGGCCACGAGTGAGAGTGGCTTGAATGCTCATTTGAACGGTAAGAAGCACAAGGCCAGAGAAGCAAGACAGAACAGGAAGATTGCTAAGAGAAACAAAAAAAGTAGGGATAATGTGATGGTTGCTGAAACAGATGTTACTACCACAAAGTTATTGGTTGATGCAGAAAAAGATCAACAGCTTCTTCAACCTTGCACAACCTTGGAAGTCATGAATGAGACTGCTGTTGATAAGGGTGTCGAAGAAAGCAAAAGAGAGGAGCAGCTTGCGAAGACGGTGGCTGATAATGATGCAAGTGCAACAGAATCAAAAAATGAGAAGTTTGTGGCGATGATGGTCGGTAAAAATGAGGAGCAACTTGGGGAAACAGTTGCTGATAACGGTGGAAGTGTAATAAAATCCACAAATGAGGATAAGCTCGTGGAGATGATGATCGGTAATGATATTATAAAATTTGAAAATGGGGGGCTAGTTGCGGAGAAAAGCCAAAATGTAGGTTCTTTGGAGAGTAAAAGAGATGCTGCAATGGATGAAGCGGAGAAGATAAGTGCATTAACAAAAAGGAGAAAAGTTGAACCTTTGTGGTGTGAAATTTGTGAAATTAGCACTTTCTCAAAAGCTGTGATGGAAGGTCATGTGAAAGGGAAAAAACACATAAAGAAAATGAACAAGTTTGGACAAAACAATGTAAGTCCCCCATCCACATCTTCTGTATCACAAAAAGCTCCTCCTATGTTGATCAAAGATGCATAA | 1281 | 0.4254 | MEFKFRAVDNKEPPTTSLHSLPDRSLQMEGSFSGFRMPLSGEAALRREIEKELIRREILRRSELEEEVRRELAMEKEFGISIQRPLMSIQGLMSHWSNSSVMNPAAEPPSILPPAEINPSPEISDKGKVIVLAKPDPNLFNAKRKATTPLVSEIEPLAFSSKKKSKEEWSCALCEIKATSESGLNAHLNGKKHKAREARQNRKIAKRNKKSRDNVMVAETDVTTTKLLVDAEKDQQLLQPCTTLEVMNETAVDKGVEESKREEQLAKTVADNDASATESKNEKFVAMMVGKNEEQLGETVADNGGSVIKSTNEDKLVEMMIGNDIIKFENGGLVAEKSQNVGSLESKRDAAMDEAEKISALTKRRKVEPLWCEICEISTFSKAVMEGHVKGKKHIKKMNKFGQNNVSPPSTSSVSQKAPPMLIKDA* | 427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g0234 | 426 | SUPERFAMILY | beta-beta-alpha zinc fingers | 365 | 399 | IPR036236 | - | |
| Psa4g0234 | 426 | PANTHER | OS06G0651300 PROTEIN | 1 | 417 | - | - | |
| Psa4g0234 | 426 | SUPERFAMILY | beta-beta-alpha zinc fingers | 151 | 200 | IPR036236 | - | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 401 | 426 | - | - | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 253 | 278 | - | - | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 192 | 209 | - | - | |
| Psa4g0234 | 426 | Pfam | Zinc-finger of C2H2 type | 371 | 394 | - | - | |
| Psa4g0234 | 426 | Pfam | Zinc-finger of C2H2 type | 169 | 193 | - | - | |
| Psa4g0234 | 426 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 417 | - | - | |
| Psa4g0234 | 426 | SMART | ZnF_U1_5 | 367 | 401 | IPR003604 | GO:0003676|GO:0008270 | |
| Psa4g0234 | 426 | SMART | ZnF_U1_5 | 166 | 200 | IPR003604 | GO:0003676|GO:0008270 | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 188 | 212 | - | - | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 253 | 268 | - | - | |
| Psa4g0234 | 426 | Coils | Coil | 188 | 208 | - | - | |
| Psa4g0234 | 426 | Gene3D | Classic Zinc Finger | 159 | 204 | - | - | |
| Psa4g0234 | 426 | Gene3D | Classic Zinc Finger | 348 | 401 | - | - | |
| Psa4g0234 | 426 | MobiDBLite | consensus disorder prediction | 401 | 418 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g0234 | Psa-Chr4 | 11296359 | 11298694 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g0234 | 169 | 230 | C2H2 Transcription Factor Family | AT2G19380 | 40.323 | 3.67e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g0234 | - | - | mtr:MTR_4g130690 | 366.311 |