Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0219 ATGGCTATGCTCCGCAAGTTATTCTTTCGTAAGCCTCCTGACGGTCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGTTTCACAACGGAAGCTTGGAATGTAGAGAAGTACAAAGTGTATGTGGATGGTATAGTTGGTGAGCTTAGAGAGAATGTGCCTGATGCTTCTATTATGGTTTTCAATTTTCGCGAGGAACACACTAAGAGTTTAATGGCAAATGTGATGTCTGAGTATGATATTACTATAATGGACTATCCTAGGCATTATGAAGGTTGTCCTGTTCTCAAAATGGAGCTAGTTCACCATTTTTTAAGGTCTGGTGAAAGTTGGCTCTCACATGGTCAACACAACGTGTTGTTGATGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTTTAGGAAGGTTTATGCTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCTCCCCACGAGCTTTTGCATTTGTTGACGCCGTTGAATCCAATTCCTTCCCAATTGAGGTATCTGCAGTATGTTTCTAGGAGGAATGTGGCCTTAGATTGGCCTCCCCTTGACAGGGCACTCATGTTGGACTGTATTATACTCAGATTCTTCCCAAACTTTGATGGGAAAGGTGGTTGTCATCCCTTGTTTAGAATTTATGGACAGGATCCTTTCAGTTCGGATAAAAGTTCTAAAATGTTGTATTCAATGCCAAAGAGAAGCAAAAATATCCGGGCTTACAAGCAGGGAGAGTGTGAACTAATTAAAGTTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTAATTTGAATGATGATATGGAGCATGAAATGATGATGTTCCGAGTCATGTTCAACACGGCTTTTGTTAGATCCAACATTCTGATGCTTAATCGTGATGAAATTGATGTTCTATGGGATGCCAAAGATCACTTTCCAAAGGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCGGATGGTAAATCATGCTTTGAGGAGAAAGAGGGCCTGCCGATTGAAGCCTTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCAAAGGCAGACGCAGCACTAAATGTGCTCCAACATATAAGTACTTCTGCTATCATGAATGACAAGTTGGATAAAGTTTCTGATCAGCACGTGGAAACTGCCACATTATTGCGTGAAACAGATCCAAAAACGCCTCAGAGGAATTCATACGAGGCAATACAATCTTTATCCTCAACTAAGCGATCCCCAAATAATGATATGAGTGGAAAAGAGGATAAGACAAACAAAGTAGATGCTATTCCACAGAGGGATGATGCATCAGACATCATCTGTCAGGAGACAATCTGCTCACCTGAAAGAAGTTTGAAATCCAGTAAACGTCCAACAGGGTCAACAAATCTTGGCATAAAACTGCAGGCACCCAATCTTTCTTCACCTGGTTCTGTGGATTCTTCTCTTTCCCCTGAAACACCTCCTCCGCGGCCTCCCTCAACTACCCGCGCTAAAGAAATTCATGATTCTCCTCCTCACACAGAATCACCTCCTCATCATATTTTGCCTTTGCAATCAGGACATCAACCACAAGGCAGAAGTTATTCACCTACTTCTAGCTCCACACCTGGGAACCAACTTTTATCTGCGCTCCACAATAAGTCGCCACCAGCTGCCATTGTTTCACCTCCTTCACTTTCAGCAGCTTCTTCAAATCAGCCACCCCCTCCTCTTTCTTCCAAAACACCTTCAAATGACATTCCTCCTGTCAAAACAAGACTTGAGTCTTCCCCTTCACAACCTCTAACTCCACCACATCCACCTACCCCCCCACTAAAAGATCACAAAGTAGTTAGAGCTGGACCTCCACCACCACCCCCATCACAGTCTCCTCCAAAGAAGGAACTACATGTTGAAACTGGACCTCCTCCTGTTCCATCTCCTATAAATGAGAAGCCGCGAGATGGAATTTCTCCTTCTCCTACTCCTCCTGCACCTCCTCTAAAAGCGGAGCAACCTGTTAGGTTTAAGCCCCCGCCACCTCCACCACCACCCAGTCTTTCAAGGGAAGTTGCAAGTCCTACACCACCCAGTCTTTCAAGAGATGCTGCAAGTCCTACTATAGCACCGCCAGCACCACCTCCACCTCGTCTTTCAAGGGAAGCTGCGAGTCCTACTATAGGACCACCGGCACCACCTCCACCTCCATCTGCAACACTTTCCTCCAGTAACCCTAATCCTTCATTACAAAAGTGTCCTCCAGTTCCACCACCTCCAATTCCTTTTGTTAAAGAAGGTCTAAAACCATGCGGTGGTTTTCCAATGTCTCTTTCTGTGGGAGGTGATGCAAATAATGTCTCAGGCACATCAGGACATCAATCTAGTTCACTAACAGGCTCAAAGGGACGAGTTCTATCACATACAACTGGCTCAAAGAATAACTCCAAAAAGTTGAAACCATTGCATTGGATGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGATGAAACGCAAAAATCTGGCGAAGCTTCCAAAGCTCCAGAGATTGATATGTCAGAGCTCGAGAGTCTTTTCTCGGCAGCAGCCCCGAGTTCAGGCCTTGCCAAGAAGTCAAATGTCCAAAGCTCGGTTAGGCCTAAATCTGAGAAAGTGCAACTGATTGAGCATAGGCGGGCATGTAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCATTGCATGATTTAATGAGTTCAGTGCTAGCACTGGAAGAGTCGCTTGACGTTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTGCAAAAGAGGAGATGGAAATAATCAAGAGTTATAAAGGGGAAAAGGAGAAGTTAGGGAAATGTGAACAGTTCTTCATGGAGTTAATGAAAGTACCACGGGTAGAATCTAAGCTCAGAGTATTTTCATTCAAGATTCAGTTCCATTCTCAGGTTTCCGATCTTAAGAATAGCTTGAATGCCGTGAATGCTGCTTCAGAAGAGATCAGGAGTTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCCATTGGATTCAGATTAGATAGCCTTCTTAAACTGACTGAGACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTAGATGACAAATTGCCTGAAGTTTTAGACTTCTCTAAGGATCTTGCTAATCTAGAGCCAGCGGCAAAGATCCAATTGAAGTTCCTGGCAGAGGAGATGCAAACTATAAACAAAGGATTAGAGAAAATTGTACAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAAAGTTCCGCAAGAAATTGAAAGACTTCCTCTGTTCTGCTGAAGCTGAAGTCCGCTCATTGGCTTCACTATATTCATGGGTGGGCAGGAACGTGGACGCATTAATTCTTTATTTTGGCGAAGATCCATCTCGCTGTCTATTCGAACAAGTTGTCACAACTTTGCTCAACTTCACTCAAATGTTCAACAAAGCCCACGAAGAAAACTGCAAACAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAGAGGATATTACCTAAAGCAATCCGGACTGGCAATGTCAAATGA 3729 0.4339 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNVEKYKVYVDGIVGELRENVPDASIMVFNFREEHTKSLMANVMSEYDITIMDYPRHYEGCPVLKMELVHHFLRSGESWLSHGQHNVLLMHCERGGWPVLAFMLAALLIFRKVYAGEHRTLDMVYRQSPHELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSSDKSSKMLYSMPKRSKNIRAYKQGECELIKVDINCHIQGDVVIEGINLNDDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEMDAAAAVIADGKSCFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQHISTSAIMNDKLDKVSDQHVETATLLRETDPKTPQRNSYEAIQSLSSTKRSPNNDMSGKEDKTNKVDAIPQRDDASDIICQETICSPERSLKSSKRPTGSTNLGIKLQAPNLSSPGSVDSSLSPETPPPRPPSTTRAKEIHDSPPHTESPPHHILPLQSGHQPQGRSYSPTSSSTPGNQLLSALHNKSPPAAIVSPPSLSAASSNQPPPPLSSKTPSNDIPPVKTRLESSPSQPLTPPHPPTPPLKDHKVVRAGPPPPPPSQSPPKKELHVETGPPPVPSPINEKPRDGISPSPTPPAPPLKAEQPVRFKPPPPPPPPSLSREVASPTPPSLSRDAASPTIAPPAPPPPRLSREAASPTIGPPAPPPPPSATLSSSNPNPSLQKCPPVPPPPIPFVKEGLKPCGGFPMSLSVGGDANNVSGTSGHQSSSLTGSKGRVLSHTTGSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDMSELESLFSAAAPSSGLAKKSNVQSSVRPKSEKVQLIEHRRACNCEIMLSKVKVPLHDLMSSVLALEESLDVDQVENLIKFCPAKEEMEIIKSYKGEKEKLGKCEQFFMELMKVPRVESKLRVFSFKIQFHSQVSDLKNSLNAVNAASEEIRSSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQTINKGLEKIVQELSTSENDGPISEKFRKKLKDFLCSAEAEVRSLASLYSWVGRNVDALILYFGEDPSRCLFEQVVTTLLNFTQMFNKAHEENCKQLELEMKKTAESEKKKCESERILPKAIRTGNVK* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0219 1242 MobiDBLite consensus disorder prediction 412 461 - -
Psa4g0219 1242 ProSiteProfiles Formin homology-2 (FH2) domain profile. 828 1226 IPR015425 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 807 835 - -
Psa4g0219 1242 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 476 777 - -
Psa4g0219 1242 PANTHER FORMIN-J 1 1226 - -
Psa4g0219 1242 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 415 440 - -
Psa4g0219 1242 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Psa4g0219 1242 Pfam Formin Homology 2 Domain 833 1201 IPR015425 -
Psa4g0219 1242 Gene3D - 199 340 - -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 441 459 - -
Psa4g0219 1242 SMART it6_source 828 1242 IPR015425 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 476 508 - -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 677 711 - -
Psa4g0219 1242 Coils Coil 1201 1221 - -
Psa4g0219 1242 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 547 572 - -
Psa4g0219 1242 Gene3D Formin, FH2 domain 827 1211 IPR042201 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 620 670 - -
Psa4g0219 1242 SUPERFAMILY Formin homology 2 domain (FH2 domain) 903 1220 - -
Psa4g0219 1242 SMART PTEN_C2_2 197 336 IPR014020 -
Psa4g0219 1242 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 604 619 - -
Psa4g0219 1242 MobiDBLite consensus disorder prediction 727 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0219 Psa-Chr4 10578420 10594340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0219 817 1224 Protein tyrosine phosphatase (PTP) family AT5G58160 72.683 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0219 - - aprc:113848377 1771.52