Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0193 ATGGACATTCACACTCTCTCACTCTCACGTCTTCTTCCTCTTCGCGTTCTTTCATTCCAAAACCCTAATTCTTCTTCTTCTTCCTCCTCCTCTCGCATCCCTCGTTCACACAACAACTACCATTTCCTGAAATTATCCTCCCCAACTCACATTAACCGTGTCTCCATCTTCACCACAACGCCACTAGCCATTGCAAATCCTTCTCCCACCATCCCTACCACAGATGATTCAGTAACCAATCCCACTCTCAGAGAATTATGTCAATCTCATGTACCTCACCAATTACTGCAAAGAATGGAAGAGGTTGGATATGTCATGCCTACGGAGGTACAGAAGGAAGCATTGCCTCATCTTTTTTCTGGCCGTGACTGCGTACTTCATGCTCAGACAGGTTCTGGGAAGACACTAGCATACTTGCTTTTGATATATTCCATCGTCAACACTAAAAAGTCTTCCGTGCAAGCAGTAGTTTTGGTGCCCACCCGGGAGCTTGGTATGCAAGTTACCAAAGTTGCTAGGATACTGGTGGCAAAGCCAACCGGAGGTGAAGGGGAGCAGAGATCAGGTGCCATCATGGCTCTGTTAGATGGAGGAACATTAAGAAGGCAGAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTATGTGTCTAATGCTGGAAAGACACCGTTTTTCGCTTGGAACCTTGCGGGTGATGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCGGAAGATTTTGACCTCGTATTCATCCTGCAATAAACGTCAAACAGTGTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATGCAGTGGAGCCAATGCCATCTCGCCTATATCACAGATTTGTAGTATGTGATACAGAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGTATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGATCCATCCACATCCCTTGTGATTGACTTTCTAAAGACATCATATCATGGTTCTTTAAATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCAAGAGCAGCTTCTCTGTTGGAGGTTAAGAAAGGTGGCGGCTATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGACTTTCCAGAAATGACTCACATATACAACTTTGATCCGCCCAAAACTGCCACTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGATGTCAACTGTTCTGTCACAAGCATTATAATCTCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTTTGTGAAGAGCTTATTCCATAA 1452 0.436 MDIHTLSLSRLLPLRVLSFQNPNSSSSSSSSRIPRSHNNYHFLKLSSPTHINRVSIFTTTPLAIANPSPTIPTTDDSVTNPTLRELCQSHVPHQLLQRMEEVGYVMPTEVQKEALPHLFSGRDCVLHAQTGSGKTLAYLLLIYSIVNTKKSSVQAVVLVPTRELGMQVTKVARILVAKPTGGEGEQRSGAIMALLDGGTLRRQKSWFKAEPPAIVVATVESMCLMLERHRFSLGTLRVMVVDEVDFIFNSSKQVSSLRKILTSYSSCNKRQTVFASASIPQHNRFLNEAVQQKWTKRDVIHIHVNAVEPMPSRLYHRFVVCDTERKLQTLLSLIQSDAPESGIIFVGEQSEKSKKTGNDPSTSLVIDFLKTSYHGSLNILLLEDDMNFNSRAASLLEVKKGGGYLLVATDVAARGVDFPEMTHIYNFDPPKTATDYLHRAGRTCRKPFSDVNCSVTSIIISEERFVLQRYENELRFVCEELIP* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0193 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 449 IPR027417 -
Psa4g0193 483 CDD DEADc 95 290 - -
Psa4g0193 483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 483 IPR001650 -
Psa4g0193 483 Gene3D - 65 299 IPR027417 -
Psa4g0193 483 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 38 482 - -
Psa4g0193 483 SMART helicmild6 363 447 IPR001650 -
Psa4g0193 483 CDD SF2_C_DEAD 316 445 - -
Psa4g0193 483 Pfam Helicase conserved C-terminal domain 326 445 IPR001650 -
Psa4g0193 483 Gene3D - 311 480 IPR027417 -
Psa4g0193 483 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 482 - -
Psa4g0193 483 SMART ultradead3 103 318 IPR014001 -
Psa4g0193 483 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 297 IPR014001 -
Psa4g0193 483 Pfam DEAD/DEAH box helicase 108 281 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0193 Psa-Chr4 9937100 9950440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0193 85 481 Eukaryotic Initiation Factors Gene Family AT1G72730 26.764 8.85e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0193 - - mtr:MTR_4g131750 753.051