Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0180 ATGGCTATGGAGAATCCTTTGGTTGGTGAACTTTTTCCTATCGGTATGCATGTTCTTGCTGTTGATGATAATCGAGTTTGCTTGAATATGTTGGAGAAAATGCTTCTCAAATGCAACTATAAAGTTACTACAACTACAGAATCGGTGAAAGCATTGGAAATTTTGAGGGAAAATAAAGATAGGTTTGATTTGGTTATTTGCGACGTTAACATGCCGGAGATGGACGGATTTAAGCTTCTTAAGAAAGTTGGACTCGAGATGGATCTACCTTTTATCATGTTGTCGGGGAATGGCGATACGAAAAGCGTGATGAAAGGTGTGATGAACGGTGCTAGTGATTATATATTGAAACCGATTCGAATGGAAGAGGTGAAGACAATATGGCAACATGTAGTGAGAAAGAAGATCGATGGAAAAGATCGTGACAATAATGCGGATGAGAAAATTGACAATGTTGTTAGGGTTTGTAGTCAAGATACGGCGTCTGATGACGCGGACAAGAATCAAATTGTAGGAGAAAAGAGAAAAAATCGAAGTGATTCAGAGGAAGATAATGATACGGATGGATCTATCGAGAAAAAGCCTCGTTTCGTTTGGGATACTGAGTTGCATAAGAAATTTGTTGTCGCGGTGAATCAACTAGGCCTTGACAAGGCTTATCCTAAGAAAATACTCGAGTTGATGAATGTTGAAGGGCTTACGCGGGAAAATGTAGCTAGTCATTTGCAGAAATTCAGATTGAATCTTAAAAGATCGGATAAATACCTGATAAATGATGCTACATTGGATTCTACTAGTCCTTATGGAAGAAGGTTCGAAAGCAGCGCATTCGCATTACCATCGTATGCATCACCGTCGTACGGATCTAGTCATTTAGTTTGTCGGCTAAACTCGCCATCGGGATTGAACGGTAGAAGGATGAGTTATTCGTCGGGGCTGTCGTTTCAGTCACAGAACAACATTAACTGTTTCCAGATGCCAGTGGCTTCTGCAAATGAAAGGCCGTGTTATTTACCGAACTTTCGAACATCAATTGGGGCGAATCGGTATCCGCAAAATAATTATCTAACTGGTTATACAAGTTCTTCTAGCTTTCAAGGCTGTAAAGTTGCAGTGAATAATGCAAATAGCAGTTTCGTTTCTTGCATCCCAAGAAATCATCCATTAACATATAATGCAATTAGCAGTTCCGTTTCTTGCATCCCAAGCAATCATCCATTGACAAATGCAAATAGAAGTTCCCTTTCTTGCATCGCAAGCAATCAACCTTTGACACATAATTTAGAAGCATTTAGAAACCACTCTTCGGTTGAAATTGCAGATGTGAAAACACAATCTCTCAACAATACTTTTGATTCGGTCGGAGGTGCAGATATAAAAACGGAATCACAATCTATGAACAATCCTTTGGATTCTATTGCATGTCATAGTCAACTAATCACTCAGATGCCGGAAACTGAGAAATTCTATACCGATCCAGAAACTTTGAATTCAAATGACGATTGCTTCTATAATCAGATGTTGTCTCTAAAAGAAGGATTCTTCGATAATAGTCGCGTATCCTTGGACGACATATATTTCATCTAA 1587 0.39 MAMENPLVGELFPIGMHVLAVDDNRVCLNMLEKMLLKCNYKVTTTTESVKALEILRENKDRFDLVICDVNMPEMDGFKLLKKVGLEMDLPFIMLSGNGDTKSVMKGVMNGASDYILKPIRMEEVKTIWQHVVRKKIDGKDRDNNADEKIDNVVRVCSQDTASDDADKNQIVGEKRKNRSDSEEDNDTDGSIEKKPRFVWDTELHKKFVVAVNQLGLDKAYPKKILELMNVEGLTRENVASHLQKFRLNLKRSDKYLINDATLDSTSPYGRRFESSAFALPSYASPSYGSSHLVCRLNSPSGLNGRRMSYSSGLSFQSQNNINCFQMPVASANERPCYLPNFRTSIGANRYPQNNYLTGYTSSSSFQGCKVAVNNANSSFVSCIPRNHPLTYNAISSSVSCIPSNHPLTNANRSSLSCIASNQPLTHNLEAFRNHSSVEIADVKTQSLNNTFDSVGGADIKTESQSMNNPLDSIACHSQLITQMPETEKFYTDPETLNSNDDCFYNQMLSLKEGFFDNSRVSLDDIYFI* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0180 528 SUPERFAMILY Homeodomain-like 193 251 IPR009057 -
Psa4g0180 528 Pfam Myb-like DNA-binding domain 199 244 IPR001005 -
Psa4g0180 528 PIRSF RR_ARR_type-B 1 525 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa4g0180 528 Pfam Response regulator receiver domain 18 126 IPR001789 GO:0000160
Psa4g0180 528 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 248 IPR006447 GO:0003677
Psa4g0180 528 SUPERFAMILY CheY-like 15 135 IPR011006 -
Psa4g0180 528 PANTHER TWO-COMPONENT RESPONSE REGULATOR 458 522 - -
Psa4g0180 528 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 450 - -
Psa4g0180 528 ProSiteProfiles Response regulatory domain profile. 17 132 IPR001789 GO:0000160
Psa4g0180 528 MobiDBLite consensus disorder prediction 160 189 - -
Psa4g0180 528 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 450 IPR045279 GO:0009736
Psa4g0180 528 PANTHER TWO-COMPONENT RESPONSE REGULATOR 458 522 IPR045279 GO:0009736
Psa4g0180 528 MobiDBLite consensus disorder prediction 166 189 - -
Psa4g0180 528 SMART REC_2 16 128 IPR001789 GO:0000160
Psa4g0180 528 Gene3D - 16 188 - -
Psa4g0180 528 CDD REC_typeB_ARR-like 18 132 - -
Psa4g0180 528 Gene3D - 190 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0180 Psa-Chr4 8940431 8942359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0180 12 325 Response Regulator Gene Family AT2G25180 49.550 2.19e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa4g0180 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0180 K14491 - mtr:MTR_4g131580 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0180 4 8940431 8942359 Psa4g0180 4 8940431 8942359 ECH