Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0176 ATGATGCAACCCGGCGGACCTGGTATGGCTCCACCCACTATCCCCCAACAACAACACCAACAACAATACCAACAACACCAGCAACAACCCTACTTGATGATGCCTCCGCAGCCTCAGCCTCAAACCCAACCTCCTCAGATGTGGGCCCCTTCTCCTCAGGCTCCTCCTCAATCCGCGCCTCAACAGCAACAGCCGCAACCTGCCAGCGCCGACGAAGTTCGTACTCTCTGGATCGGTGATTTGCAATACTGGATGGACGAGAATTATCTATACCAATGTTTCTCACACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGCAATAAGCAGACTAATCAATCTGAAGGTTATGGATTTCTTGAGTTTACTAGCCGTTCTGGTGCTGAGAGAGTACTTCAATCATTTAATGGCACCATTATGCCAAATGGGGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCACGATGATTCTCCTGATTACACTATATTTGTTGGAGACTTGGCTGCTGATGTTACTGATTATCATCTAACGGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCAGGACAAAAGGTTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGGCCCATGCGTATTGGACCAGCTTCTAACAAAAACCTTAGCACACAGACGTCAAAAGCTTCATATCAGAATCCTCAAGGGGGTGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAAACAAGTCTTTGGCCAATATGGAGAACTTGTTCATGTGAAGATTCCGTCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCAGCAGAGGAAGCACTGCGGGTTTTAAATGGTACACTTCTAGGTGGACAAAATGTTAGACTATCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGCAGTGGATACTTTGGATATCCCCAGGGTTATGAAAATTACGCATACGCCCCTGCTGCTGGACAGGACCCTAATATGTATGGCAGTTATCCTGCAGGGTATGCTAACTACCAACCTCCTCAGCAGCAACAGCAATTAGGATATAGCTAA 1233 0.4566 MMQPGGPGMAPPTIPQQQHQQQYQQHQQQPYLMMPPQPQPQTQPPQMWAPSPQAPPQSAPQQQQPQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFTSRSGAERVLQSFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLSTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLKQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNMYGSYPAGYANYQPPQQQQQLGYS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0176 410 CDD RRM1_SECp43_like 75 155 - -
Psa4g0176 410 MobiDBLite consensus disorder prediction 33 62 - -
Psa4g0176 410 CDD RRM3_NGR1_NAM8_like 273 344 - -
Psa4g0176 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 346 IPR000504 GO:0003723
Psa4g0176 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 407 - -
Psa4g0176 410 MobiDBLite consensus disorder prediction 13 32 - -
Psa4g0176 410 Gene3D - 166 242 IPR012677 -
Psa4g0176 410 SUPERFAMILY RNA-binding domain, RBD 37 155 IPR035979 GO:0003676
Psa4g0176 410 Gene3D - 73 153 IPR012677 -
Psa4g0176 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Psa4g0176 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Psa4g0176 410 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 22 407 - -
Psa4g0176 410 Gene3D - 250 355 IPR012677 -
Psa4g0176 410 SUPERFAMILY RNA-binding domain, RBD 161 263 IPR035979 GO:0003676
Psa4g0176 410 MobiDBLite consensus disorder prediction 243 271 - -
Psa4g0176 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 339 IPR000504 GO:0003723
Psa4g0176 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 141 IPR000504 GO:0003723
Psa4g0176 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 232 IPR000504 GO:0003723
Psa4g0176 410 CDD RRM2_SECp43_like 166 245 - -
Psa4g0176 410 SUPERFAMILY RNA-binding domain, RBD 261 371 IPR035979 GO:0003676
Psa4g0176 410 MobiDBLite consensus disorder prediction 1 71 - -
Psa4g0176 410 SMART rrm1_1 168 242 IPR000504 GO:0003723
Psa4g0176 410 SMART rrm1_1 75 150 IPR000504 GO:0003723
Psa4g0176 410 SMART rrm1_1 275 342 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0176 Psa-Chr4 8751653 8756445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0176 73 353 Eukaryotic Initiation Factors Gene Family AT2G23350 27.622 3.61e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0176 - - gmx:100796848 596.66