Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0174 ATGGAAGAAGGTAACACCGATCTTCTCTGTCCATCACCCACACCCTTTCGATCTTCTTCACTCCTCAAAGACATTTCCAACTTCAAAACCCCTAAACGCTCCTCTTTCTCTCTCAACGCCCAATCTCCATCAACACAGTACTTCACCGCTTCCAAATCCAAACAAACCACACTCCTCCGTCGCCCTAAGAAATCCTCAACAGCTGCTTCTAAGAAACTCAAAGCATTCCAACTCGAACAGTCTCACTCTTCTCGAAACGCACAGATTAAAAAAGAACAATCGCTCAAATCCCTAGCCAAATCCCTAACCGTTTGGCTCAATTTCCTTCTCGAATCTCCTGCTTCGTGCGGTTGCGAACTTTCAATTGCTGGTGTTCAGATAGCAGATGCTTCTCCGGCGACCAAAGGGAAACGTGATAATGTATCGAGAAATTCGGTTGGAGTTGATTCTTCCTGGCGAACTCCCAAACGCCAGAGGAAGACCGCGGCATGTTCGTCGCGAGTTGGTAAGGAAATTGTGTCTAATGCGGATTCACAGAGTTCTTTGTTTTTGCGATTAAAGGATTCTCTGAAGGATGTATGTAGTTTCGATGATTTCAAGCAGCGGATGAGTGTTTATTTGAGTCTCGGAACGTGTGAAGATATCTTCCATGTCATGAATCATGTTACCAAGACAATTGATGAAGGAAGGCTAAACATGAAGGCACATTGCCCAATAGTAACAGATTTTGGGTTGAAGGATAAGGCTGTAAAAGTCCTTATGTGTTATAATCCAAGTTGGTTGCGAATCGGACTGTATATAATTTTTGGTGGGGACTCATTAGTGTCAAATGGGGATGGTAATTCTGATCAAGATGCTATGTTTCTGAAAATGGTCATTGACAAACTGTTTTTTACACATGAGGGTTTAGCCAAAGCATATGCATATAACAAGATGGTTGAAGGAGTTTATAGGTCTGGTTACTATGAGAATTTAGGGAATGTGATTTTGAAGAGAATATTGTTGCTTGTGCTAATCCTTGATAAAGCTAAATGTCAATGTTGCCTCCCTATTGAGTATGGTATTGATGGATTGGATGGTGGTTCACCTTTATTATTCAAAGCAGAGTTTTGGATTAAATCAAGTAGTCAAGTGATTCAGGAATTTCTCTCATCTGATGTAATGCGCGGAGAAGGAAACCTTCTAACACATTTGATTATTTTAGGTTACAAAGTGTCTCACCAACAGGGGCCTCTTGTTGAGTATGATTTCCGAGTCAGAGATTTATTCATAGATCTCCAAGACGGGCTAAAACTGTGTAGAGCTATTCATCTCCTGCAAAACAATTCTTCTATACTCAAGAAAATTGTAGTTCCTTCTGACACCCGTAAGAAAAATTTGGTAAACTGTGGTGTTGCCCTACAATATCTTAGACTAGCTGGGGTCTCATTACATGATGAAGACGACACAATGATTGCAACAGATGATATTATTTATGGGGATAAAGAACTTACAATTTCTTTGCTCTGGAACATGTTTGTTCGTTTGCAGCTGCCTTTGCTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCAAAAATTCGTGGACTTGACACGGATCTCGCAAGCGATGCAAATTCTAGTTCTCTGGATTTGCTTTTGAAATGGATTCAGGCTGTTTGTGACAATTATAACTGTACAGTTGACAATTTTTATTCCCTTGTTGATGGCAAAGCAATCTGGTGCTTACTTGATTATTACTTCCAGAAGGAACTTCACAATGTCAGTTCATTGAAGGAAGTTTATGAAAAAAGTGGTAAGACATCAATTATGTCAGTTAATGAATATTCGGATGCATTGTACAATTTCATATTATCCCAGAAATTGACCACGTTGTTGGGGAATTTTCCCGAGGTGCTTCAAATTAGTGATCTACTTCAGCATAATGGTGCTTGCAGTGATCGAAGTGTTGTGATATTGGTTGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAAAGTGGATCACTTAAATTTTCATAAGCTATTGGGCTATGACTCCCAAAACACAAATCGTAGGAATTTGAGGACGGCACAATACCATTCTAGTTCTGAATCAGGACAAAAGCCTTATGCTTCAGATGTGTGGGATGATGAAGATTCGGCAAGAAAATTCAAGGCCATCCAGACTTGGTGGCAAGACATGGCTGATCACAACTGTATTATGCAGCCATCTGTCTCTATTTTGCAGACATCTAGGGCCACTGAAAGCAACACTGCTGTTAGAAGAGAAGATGCTGCAAGAACAATACAAGCACACATCAGAGGACTGGTTGCACGGTGCAAGTTTCTCAAGATGGTAGATGCTGTTACCCTTTTGCAGACTGTTTTCCGAGCTAGGAAGAAAGTAAGGCAGGAGCCGGTTTGCATGTTATTCACTGCTGGTCCAATCTGTGATTTCTCATGTGAAACATTGAAGCAATCTGAAGTATATGAGAGGTATGCCATGCTTTTCTATCATAGGCATTCTTTTTTGAGGTTGAAAAGGTCAGCACAGCTTATCCAGCAAGCAGTGAGGGGTTGGCTCTATTGGAGGTCTGAACACGTATGTAGTATAAGTCCTGACCTCATGATTTCAGACACAGTGACTGCTGCCACTACTGTTCAGAAATTTGTTCGTGGTTGGATGGCGCGGTCTAGATATATTTGTGAGCTAGATCAAAAAGAAAAAGCTCTAAAATTTTCTGAACAGAAACTTATCTCTGATCTTAAAACAAAGGCAGCTGTTACCATTCAGCTTGCTTGGAAAAACTACATAAGCTGCAAGTCTACAAGGAAGGAGCACTTATTTGCAACTAAAATTCAATGTAATTTCCGTAGGTGGTTAATGAGAAAACAATTTTTAAATCAGATTCGTGCTGTCATAAAAATTCAATCATATTTTCGAATGTGGAGATGTGAGAATGCTATTCAGAACTTCAAAGCCTTGTTTAAGTCTGCTATTGTCATTCAATCTTTTTTTCGTGGATGGATTGCTCGGAAGCATGCTTGTACTCGTAGGAATCAGATTCTTGAGATTCAAAGGCATTGCCGCGGTTGGCTTGTGAAACGAGATTTTGTGTTTCAAAGAGATGCTATAATAAAAATCCAGAGTGTCATTAGAAGCTTGAACTGCCAGAAGACACTCAATTGTCAGAAAGATGCTGTATTGGAGATTCAGCGCTCCATCAGGGGGCATTTAACTCGAAATCGGCTATTAGGTAGTGCTTCCAAGTTACATGCAGCTGTTACTGGTAGTTGCATTTCAAGACCTGTTGGCTTACGCAGTTTTCAACTTGAAGCATTCATGTGTGCAGTAGTGAAATTGCAAAGGTGGTGGAAGGGTCTCTTGTTGCTTAAATTGATGAATAGGTCAGCCGTCAGAATCCAGTCTTGTACACGTGGGTGGATAGCCAGGCGAAAGGCCACAGTTGAGAAACCCCGTACTAATGTCATGGAAGAACATGCCGCATTGGAGCTCCAGCGCTATATTAGGGGACATTTAACTCGAAATTTGATATTAGGCAGTGCTTCTAAGCTGCGTGCAGTTGCTGCTGGATGCATTTCAAAACCAACAGGCTGTTCTAGTTTTCAGTTAGAACTATTCTTGTTTCAAGTAGTGAAATTGCAACGACGGTGGAAACATCTCTTGTCACATAAACGGAGGACAAAGTCTATAATCATTATACAGTCTCAAATTCGTGGGTGGGTAGCCAGGCGAAGGGCCAATATTTATAGACATCATATTATTGTCATACAGTCGCACTGGAAAGGTTACATTGCTCGTAAGCAGTCAACAAAACAGCTAATGGATTTGCGCTTGAGATTGCAAGAGTCTTCAAAAAATGTGGATGATAGCAAACGTCTCATAAACAGACTCCTGGCAGCGCTTTCAAAGCTACTTAATATGAAGAGTCTCAGTGACATCCTTCATACTTGTTCAACATTGAATTTGGCGACAGGGCATTCTCAGAGATGCTGTGAAGAACTTGTGGCTGCTGGGGCCATTGAGACCTTGCTGCGCCTTATTGGATCAATGAGCAGGAGTATCCCTGATCAAGAGGTTTCAAAACATGTTTTATCAACTCTTGGAAACCTTGCTCGCTATCCTCATCTACTAGAAGTGTTGATACAAACACAGGGTTCTATACAAACAATCGTCTTGGAGTTAACAAGGAATAAGGAGGAGGGCTTCGTCATTGCTTCTGGGCTTTTGAAGAAAATATGCTCAACTCACAATGGCGCTGACACCATACTTAATTCCTCTGCCTTACTGAAGAGACTGCACGCTCTTGTTGAAGAGCTTACTAGGAAGGTCACTTACCAAAAAAGAAATGTTCGGGGTCCTACTCCTAGTCCAGTTGTTACTGTTAAAGAAAACACAGATAGAAGATTGAAGGAAGCTACGGAGATTCTAAAGCTTCTAAAACACCGTTGA 4455 0.4085 MEEGNTDLLCPSPTPFRSSSLLKDISNFKTPKRSSFSLNAQSPSTQYFTASKSKQTTLLRRPKKSSTAASKKLKAFQLEQSHSSRNAQIKKEQSLKSLAKSLTVWLNFLLESPASCGCELSIAGVQIADASPATKGKRDNVSRNSVGVDSSWRTPKRQRKTAACSSRVGKEIVSNADSQSSLFLRLKDSLKDVCSFDDFKQRMSVYLSLGTCEDIFHVMNHVTKTIDEGRLNMKAHCPIVTDFGLKDKAVKVLMCYNPSWLRIGLYIIFGGDSLVSNGDGNSDQDAMFLKMVIDKLFFTHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLILDKAKCQCCLPIEYGIDGLDGGSPLLFKAEFWIKSSSQVIQEFLSSDVMRGEGNLLTHLIILGYKVSHQQGPLVEYDFRVRDLFIDLQDGLKLCRAIHLLQNNSSILKKIVVPSDTRKKNLVNCGVALQYLRLAGVSLHDEDDTMIATDDIIYGDKELTISLLWNMFVRLQLPLLVDKTSLVGEISKIRGLDTDLASDANSSSLDLLLKWIQAVCDNYNCTVDNFYSLVDGKAIWCLLDYYFQKELHNVSSLKEVYEKSGKTSIMSVNEYSDALYNFILSQKLTTLLGNFPEVLQISDLLQHNGACSDRSVVILVVFLASQLFVKKKVDHLNFHKLLGYDSQNTNRRNLRTAQYHSSSESGQKPYASDVWDDEDSARKFKAIQTWWQDMADHNCIMQPSVSILQTSRATESNTAVRREDAARTIQAHIRGLVARCKFLKMVDAVTLLQTVFRARKKVRQEPVCMLFTAGPICDFSCETLKQSEVYERYAMLFYHRHSFLRLKRSAQLIQQAVRGWLYWRSEHVCSISPDLMISDTVTAATTVQKFVRGWMARSRYICELDQKEKALKFSEQKLISDLKTKAAVTIQLAWKNYISCKSTRKEHLFATKIQCNFRRWLMRKQFLNQIRAVIKIQSYFRMWRCENAIQNFKALFKSAIVIQSFFRGWIARKHACTRRNQILEIQRHCRGWLVKRDFVFQRDAIIKIQSVIRSLNCQKTLNCQKDAVLEIQRSIRGHLTRNRLLGSASKLHAAVTGSCISRPVGLRSFQLEAFMCAVVKLQRWWKGLLLLKLMNRSAVRIQSCTRGWIARRKATVEKPRTNVMEEHAALELQRYIRGHLTRNLILGSASKLRAVAAGCISKPTGCSSFQLELFLFQVVKLQRRWKHLLSHKRRTKSIIIIQSQIRGWVARRRANIYRHHIIVIQSHWKGYIARKQSTKQLMDLRLRLQESSKNVDDSKRLINRLLAALSKLLNMKSLSDILHTCSTLNLATGHSQRCCEELVAAGAIETLLRLIGSMSRSIPDQEVSKHVLSTLGNLARYPHLLEVLIQTQGSIQTIVLELTRNKEEGFVIASGLLKKICSTHNGADTILNSSALLKRLHALVEELTRKVTYQKRNVRGPTPSPVVTVKENTDRRLKEATEILKLLKHR* 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1251 1279 IPR000048 GO:0005515
Psa4g0174 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1065 IPR027417 -
Psa4g0174 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1216 1275 IPR027417 -
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1128 1156 IPR000048 GO:0005515
Psa4g0174 1484 SMART arm_5 1329 1374 IPR000225 GO:0005515
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1228 1255 IPR000048 GO:0005515
Psa4g0174 1484 Coils Coil 1464 1484 - -
Psa4g0174 1484 Pfam Calponin homology (CH) domain 418 507 IPR001715 GO:0005515
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1012 1041 IPR000048 GO:0005515
Psa4g0174 1484 Gene3D - 1275 1448 IPR011989 -
Psa4g0174 1484 MobiDBLite consensus disorder prediction 132 152 - -
Psa4g0174 1484 SMART iq_5 755 777 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 778 797 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 839 861 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1158 1180 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 988 1010 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 939 961 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 873 895 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1057 1079 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1250 1272 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 962 984 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1011 1033 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1227 1249 IPR000048 GO:0005515
Psa4g0174 1484 SMART iq_5 1127 1149 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 965 979 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1254 1270 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 991 1008 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1229 1247 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1161 1177 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 758 776 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1060 1078 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 944 960 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1130 1147 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 877 894 IPR000048 GO:0005515
Psa4g0174 1484 Pfam IQ calmodulin-binding motif 1018 1032 IPR000048 GO:0005515
Psa4g0174 1484 ProSiteProfiles Calponin homology (CH) domain profile. 388 510 IPR001715 GO:0005515
Psa4g0174 1484 SUPERFAMILY Calponin-homology domain, CH-domain 334 592 IPR036872 -
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 991 1018 IPR000048 GO:0005515
Psa4g0174 1484 Coils Coil 1268 1288 - -
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 940 969 IPR000048 GO:0005515
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 756 784 IPR000048 GO:0005515
Psa4g0174 1484 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 10 1154 - -
Psa4g0174 1484 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1159 1482 - -
Psa4g0174 1484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1340 1387 IPR000225 GO:0005515
Psa4g0174 1484 Gene3D - 405 510 IPR036872 -
Psa4g0174 1484 MobiDBLite consensus disorder prediction 137 152 - -
Psa4g0174 1484 Gene3D - 1036 1089 - -
Psa4g0174 1484 Gene3D - 1126 1191 - -
Psa4g0174 1484 Gene3D - 990 1035 - -
Psa4g0174 1484 Gene3D - 941 989 - -
Psa4g0174 1484 Gene3D - 875 940 - -
Psa4g0174 1484 Gene3D - 1226 1274 - -
Psa4g0174 1484 Gene3D - 755 801 - -
Psa4g0174 1484 PANTHER UNCHARACTERIZED 10 1154 - -
Psa4g0174 1484 PANTHER UNCHARACTERIZED 1159 1482 - -
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 876 903 IPR000048 GO:0005515
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 963 992 IPR000048 GO:0005515
Psa4g0174 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 986 IPR027417 -
Psa4g0174 1484 Gene3D - 537 662 IPR036872 -
Psa4g0174 1484 SUPERFAMILY ARM repeat 1297 1439 IPR016024 -
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1058 1087 IPR000048 GO:0005515
Psa4g0174 1484 ProSiteProfiles IQ motif profile. 1159 1188 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0174 Psa-Chr4 8671362 8682818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0174 914 1064 Myosins gene family AT1G04160 29.032 2.46e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0174 K16743 - qsu:112015851 1434.08