Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0135 ATGGCTATTTCATATTCACTTCTCTTACTAACAATTGCTTTAACCTTTGTTAATGCATATTCAAAAGATTACTACTATAACACTAAGAAACCAAGCCTCAATAAGATAGATTCTTGTTGGCGCGCGAAACCGAATTGGTCGTTAAACCGAAAAGCCTTAGCTGATTGTGCTATTGGTTTTGGCAAAGATGCAATTGGAGGCAAATATGGTGCAATATATATAGTTACTGATTCATCTGATGATCCTGCGAATCCTAAACAAGGTACACTTCGTTATGGCGCGATACAAACGAAGCCGCTTTGGATCATTTTTGATAGGGACATGGTTATTAGATTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGAAGAGGAGTGAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAATCATGTGATCATACATGGAATTAGTATTCATGATTGTAAGCCGAGTAATGCAGGACTTGTTAGAAGTAGTCCTGATCATGTTATGTTGCTAGGGCACAATGACGATTACACCGCCGATAAAATAATGAAAGTAACAATAGTTTTCAATCGGTTTGCTAGTGGACTAATCGAAAGAATGCCAAGAGTGAGATTTGGTTATGCACATGTGGCCAACAACAAATATGATGGGTGGAAAATGTATGCTATAGGAGGAAGTGCTAACCCAACTATTTTAAGTGAAGGGAACTTTTTTACAGCACCCAATGACAATAGTTCAAAACAGGTTACAAAGAGGGAAGCAAAGGGAAACTGGAAGAGCTGGAAATGGAGGTCTTCAAAAGACGCATTCTCAAATGGTGCTTATTTCGTACCTTCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGTCGCTGTTCCAGCTTATATGGTGCCTGCTATAACACTCAATGCAGGTCCATTGAATTGTTACGTTGGAAGGTCATGTTAA 975 0.3774 MAISYSLLLLTIALTFVNAYSKDYYYNTKKPSLNKIDSCWRAKPNWSLNRKALADCAIGFGKDAIGGKYGAIYIVTDSSDDPANPKQGTLRYGAIQTKPLWIIFDRDMVIRLKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVNHVIIHGISIHDCKPSNAGLVRSSPDHVMLLGHNDDYTADKIMKVTIVFNRFASGLIERMPRVRFGYAHVANNKYDGWKMYAIGGSANPTILSEGNFFTAPNDNSSKQVTKREAKGNWKSWKWRSSKDAFSNGAYFVPSGYGSCAPNYTPSQSFVAVPAYMVPAITLNAGPLNCYVGRSC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0135 324 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Psa4g0135 324 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Psa4g0135 324 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Psa4g0135 324 SMART amb_all 107 248 IPR002022 -
Psa4g0135 324 Gene3D - 170 317 IPR012334 -
Psa4g0135 324 Gene3D - 33 169 IPR012334 -
Psa4g0135 324 SUPERFAMILY Pectin lyase-like 54 324 IPR011050 -
Psa4g0135 324 Pfam Pectate lyase 169 242 IPR002022 -
Psa4g0135 324 PANTHER PECTATE LYASE 170 323 - -
Psa4g0135 324 PANTHER PECTATE LYASE 8 172 - -
Psa4g0135 324 PANTHER PECTATE LYASE 18-RELATED 8 172 IPR045032 GO:0030570
Psa4g0135 324 PANTHER PECTATE LYASE 18-RELATED 170 323 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0135 Psa-Chr4 6076540 6078145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0135 6 324 Polysaccharide Lyase AT1G11920 54.167 7.61e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0135 K01728 - gmx:100807483 496.508