Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0133 ATGGAAGTAGTAGTTCCTAGACGAGTCCGGTCAAATAAACAGACTGGTGATAAGATGAAGTTGTCTGGATGCTCAAAAGTTTTTGAAAGTTTAAAGAGAAAGGCTGAAGAAATTCATGAGTGTGGTGGTGGTAATGAGAGAACTTGCTCAAAATATTTTGGAATTTCATATAAGAGGAGAACTCAAGAATTTCATAGCGATAAAAATTCAGAAGGGGTAAAAGATATTATGAAATCTTTAAAAGAGACATCCAATGTTCCATCTAAGAAAAGAGTTAAGCCAAAGAAGCGTGCTCTTTCATTAAAGAAACAGGAACTTGAAGATGATCTCTTGATGGATGATTTTGAACAAGATGATGAAATGTTTTTTCTTAACACAAAGAGCAGGAGCAGAACTGGTAGAAGCAATAACACGATGCAGGGTGTTCAACAAAATACTCGGAAATGTCATCAGTGCCTGAAAAAGGAAAGAATGTCTTTTGTGCCATGTACTAAATGCAGCAAAATGTACTGTATGCGATGCATCAACCAATGGTACCCTGATATGTCTATAGAAGAAGTTGCTGGAAGTTGCCCATTTTGTCTTAAAATTTGCAATTGCAATGTTTGCTTGCGTTCGAAAGGAACAATTAAGACATCTAACATGGACATCAACAATTATGAAAAAGCTCAGTATCTGCATTACATGATTAACTTACTCCATCCATATCTAAAACAAATTTGTCATGAACAAAGTCAAGAGGTAGATATTGAAGCCAAAATACAAGGAAAACCTTCTTCTGAGATTGTGGTACCACAAAGTCTTTGTTGGGACAATGAGCGAGTCTATTGTGATTACTGTGCTACCTCAATTATTGATCTTCATCGAAGCTGCCCTAGTTGTTCCTATGAACTTTGCCTTAAATGTTGCCAAGAAGTTCGTGATGGAAGTATTACTCCCCGTGCCGAGATGAAATTCCCATATGTGAATCGGGGCTATGACTATATGCATGGTGGTGACCCTATACCAATGTCTTGTGATTTAGAGACTTCAGATGGTCACCTTGAGTTATCTACAAAGTGGAATGCCAAGACTGATGGAAGTATTTGTTGTGCACCGAAGGAGATAGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCTCCCTCCCACATGGGTGGATGTCTGATTTGGAAGCCAGAGCTCACAATATGCTGACAAATTGGGAAACTGAACAAACAGCTCTTCAGCGGGAAGGAGCTGAATCAAACTACAACTCAATGAAAAAGGAATCTTTTTCAGAGTCAAGAGACATTTTAAAACAAGGGATGCCACTCTTCCAAAAACATTGGGCTAATGGTGAACCAATTATTGTCCGTGATGTTCTAAAGCAGGGTACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGTGCATTGTGTGATAATGTGGGTTCAGTTATGAGTTCAAAAATGTCAGAAGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGAAATTAATACTCGTCGGTTCTTTAAAGGTTATATAGAGGGACGAACATATAGAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTGCCTCGTCATTGTGATGAATTTATTCATTCCTTGCCATTTCAACAATATACTGATCCTCGGGCTGGAATTCTCAATCTGGCTGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACTCATACAGCAGAGGTACAATTAACTGATGATCAGCATTCGGCTATTCCCAAATTGAAAGAAGCACATAAGACACAAGATGAGAGAGAAAACCGTGCTCCTGAAAGGGCGGCAAGATGCCTAAATAGTCGACTTTGTGACAACAGAGAACATGAAAACCGTCCTATTCAAATCAGTGGAGATATGTTTCGAAATGATGTGTCTGAGGGGGGCAATTTTGCTGCTACTATAGAAAATGAAACAATGGTAACAGGTAGTGCCTTGTGGGATATATTTCGGAGAGAGGACACTGAAAAGCTAGGAGCATATCTTAGAAAACACTCAAAAGAATTCAGACATACTTATTGTTCACCGATTGAAGAGGTTGTACATCCAATTCACGACCAGTGCTTTTATTTGACTTTGGAGCATAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAAAAACTCGGGGAGGCAGTCTTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTCGTATCCCCAGAAAATGTTCATGAGTGTCTTCGCTTAACTGAAGAATTCCGCCAGCTTCCGAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGATAGTTTATGCCGTTGATCAAGCCCTCAAGGACCTAGAGGCTTTACTCGATTCTTCTTGA 2550 0.4008 MEVVVPRRVRSNKQTGDKMKLSGCSKVFESLKRKAEEIHECGGGNERTCSKYFGISYKRRTQEFHSDKNSEGVKDIMKSLKETSNVPSKKRVKPKKRALSLKKQELEDDLLMDDFEQDDEMFFLNTKSRSRTGRSNNTMQGVQQNTRKCHQCLKKERMSFVPCTKCSKMYCMRCINQWYPDMSIEEVAGSCPFCLKICNCNVCLRSKGTIKTSNMDINNYEKAQYLHYMINLLHPYLKQICHEQSQEVDIEAKIQGKPSSEIVVPQSLCWDNERVYCDYCATSIIDLHRSCPSCSYELCLKCCQEVRDGSITPRAEMKFPYVNRGYDYMHGGDPIPMSCDLETSDGHLELSTKWNAKTDGSICCAPKEIGGCGSSVLELRRSLPHGWMSDLEARAHNMLTNWETEQTALQREGAESNYNSMKKESFSESRDILKQGMPLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVGSVMSSKMSEVKAIDCMANCEVEINTRRFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIHSLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNILTHTAEVQLTDDQHSAIPKLKEAHKTQDERENRAPERAARCLNSRLCDNREHENRPIQISGDMFRNDVSEGGNFAATIENETMVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPIEEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHECLRLTEEFRQLPKNHKAREDKLEIKKMIVYAVDQALKDLEALLDSS* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0133 849 Pfam JmjC domain, hydroxylase 691 795 IPR003347 -
Psa4g0133 849 SMART cupin_9 539 812 IPR003347 -
Psa4g0133 849 ProSiteProfiles JmjC domain profile. 558 812 IPR003347 -
Psa4g0133 849 SUPERFAMILY Clavaminate synthase-like 439 845 - -
Psa4g0133 849 ProSiteProfiles Zinc finger RING-type profile. 149 194 IPR001841 -
Psa4g0133 849 Gene3D Cupin 426 821 - -
Psa4g0133 849 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 32 847 - -
Psa4g0133 849 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 144 215 IPR018866 -
Psa4g0133 849 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 32 847 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0133 Psa-Chr4 5981796 5987440 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa4g0133 JmjC 7.5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0133 K15601 - gmx:100797860 1171.38