Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0127 ATGGGTTGTCGCGGTAGCAAGGAGAGGAAACCAAAGGAAGTTACTAGTACCCGCCGTGGACCATCCGTCACCGGCGGAGGTGGTGGCGGCGGTGGTGGAGGTGGTAGTAGTAATACTCACTACCACAGTGTTCAATCATCTTCCAGTCATGTTCAGACTTCATCACCACCAAAACCTAATTCACACTCACAAGCTTCTTCAACAGTGATAACAACAACACCGAATCCTAAACCCTCTGTCACACCTCAGAATGTGAAAACTGTGCAGAAAACCGATACAGCTATATTAGGTAAACCTTTTGAAGATATTAAGAAGTTCTATAGTTTAGGTAAAGAATTAGGGCGAGGTCAATTTGGGATTACGTATTTCTGCACTGAGAGTTCTACTGGTTTGAATTATGCTTGTAAATCTATATTGAAAAGGAAGCTTGTGAGCAAAGCTGATAGAGAAGATATTAAGAGAGAGATTCAGATTTTGCAGCATTTATCAGGTCAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAGATTTTCTGTGCATCTTGTGATGGAGCTTTGTGCTGGTGGAGAGTTGTTTGATAGGATTATTGCGCAAGGTCATTATTCAGAGAGAGCTGCTGCATCTCTTTGTAGGGCTATTGTTAATGTTGTGCATATTTGTCATTTTATGGGTGTTTTGCATCGCGATTTGAAGCCGGAGAATTTCTTGCTGTCTAGTAAGGACGAAGGTTCGGCGCTCAAGGCTACTGATTTTGGACTTTCTGTTGTCATCGAAGAAGGCAAGGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTGCTCCTGAGGTACTGCGTCGTAGTTATGGGAAGGAAATAGACATTTGGAGTGCAGGCATTATATTGTATATTCTCCTTAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGCGAACTTGATTTTGTTAGTGAACCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGAATCCGGATCCAAAGAAGAGAATTACTTCTACACAAGTCCTTGAACATCCATGGATGAGAGAAGGTGGAGAAGCATCTGATAAGCCAATTGATAGTTGCTGTTCTATCTAG 1149 0.4169 MGCRGSKERKPKEVTSTRRGPSVTGGGGGGGGGGGSSNTHYHSVQSSSSHVQTSSPPKPNSHSQASSTVITTTPNPKPSVTPQNVKTVQKTDTAILGKPFEDIKKFYSLGKELGRGQFGITYFCTESSTGLNYACKSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEGSALKATDFGLSVVIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISDSAKDLVRKMLNPDPKKRITSTQVLEHPWMREGGEASDKPIDSCCSI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0127 382 Gene3D Phosphorylase Kinase; domain 1 109 193 - -
Psa4g0127 382 Pfam Protein kinase domain 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0127 382 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 60 379 - -
Psa4g0127 382 MobiDBLite consensus disorder prediction 1 85 - -
Psa4g0127 382 MobiDBLite consensus disorder prediction 36 85 - -
Psa4g0127 382 ProSitePatterns Protein kinases ATP-binding region signature. 113 140 IPR017441 GO:0005524
Psa4g0127 382 Gene3D Transferase(Phosphotransferase) domain 1 194 378 - -
Psa4g0127 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Psa4g0127 382 ProSiteProfiles Protein kinase domain profile. 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g0127 382 SUPERFAMILY Protein kinase-like (PK-like) 106 369 IPR011009 -
Psa4g0127 382 CDD STKc_CAMK 106 364 - -
Psa4g0127 382 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 379 - -
Psa4g0127 382 MobiDBLite consensus disorder prediction 1 16 - -
Psa4g0127 382 SMART serkin_6 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0127 Psa-Chr4 5647334 5650385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0127 73 380 EF-hand Containing Proteins AT4G04720 78.549 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa4g0127 Pkinase 2.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0127 K13412 - gmx:100812843 564.688