Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0125 ATGGTTGAGGTGGGGTCTGTGCCGTGCTGTTCAGTTTCTATCTACCGAGTTAGTATGAGTCAACTCGGTCTCATATTACATGAATCGCTCCGTCCTCAAAGAGAAGCAAGAACCTTACTCGGTTTATTAACGGAACAAATGGACGCTGCAGATTCATCAACAACGAGGAGACGTAGTCTTAAAGAACGGTTCAGATTCACCGGTATCGGTGGTTGCTGTGGTGCCACTTGGGTTTTCCGTCCAATTATCAGACACGAACATCACCACCAACAACAACAACGACAACGAGAGGGAGCAAGAGAAGGAGAAACTAATGTAGAGCAAGAAGAACTACAGGTTCAAGATCCGAATCCGGATCCGTCTAGTTCTGGCATGAATCTTGCGGCGGCATTGGCGGCGGAGCGTCAGATGAGAGGATCGGAGGAAAGTAGCGGCGGCGAAAGAGGGACGCCGTGGAGAGTTTCGTTAATGAAACTGTTGGAGGAAACGGAAGTGGAAAGTGAGAGTACCACGACGGTTATGGAGGGGAGTGATTCAGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTAGACATTTTCTGA 690 0.4855 MVEVGSVPCCSVSIYRVSMSQLGLILHESLRPQREARTLLGLLTEQMDAADSSTTRRRSLKERFRFTGIGGCCGATWVFRPIIRHEHHHQQQQRQREGAREGETNVEQEELQVQDPNPDPSSSGMNLAAALAAERQMRGSEESSGGERGTPWRVSLMKLLEETEVESESTTTVMEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0125 229 MobiDBLite consensus disorder prediction 88 151 - -
Psa4g0125 229 Pfam Zinc finger, C3HC4 type (RING finger) 178 223 - -
Psa4g0125 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 228 IPR013083 -
Psa4g0125 229 CDD RING-HC 181 218 - -
Psa4g0125 229 SMART ring_2 181 218 IPR001841 -
Psa4g0125 229 ProSiteProfiles Zinc finger RING-type profile. 181 219 IPR001841 -
Psa4g0125 229 MobiDBLite consensus disorder prediction 109 124 - -
Psa4g0125 229 PANTHER OS01G0917900 PROTEIN 35 229 - -
Psa4g0125 229 SUPERFAMILY RING/U-box 169 226 - -
Psa4g0125 229 MobiDBLite consensus disorder prediction 88 107 - -
Psa4g0125 229 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0125 Psa-Chr4 5371480 5373677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0125 39 229 C3H Transcription Factor Family AT4G22250 52.427 7.10e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0125 - - gmx:100792613 242.276