Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0116 ATGACTCCGATCGAAACCCCTATTCAACAACAACGTTTATCGTCGAAACGGAAATTAGACGATGACGACGAAAGCGTGTTAGATGATGACTTAGTGTATGTGAGAATGAGAAAAGAGGAGACTACGGAAACCACAGTTAAGCCGTGGAGCGGCGGAGGTTGCCGTGGCGGCGGTGGCAGTGGCGATGGTTTATTGAAGAATAGAGGACCGGTTTGTTTTTTCATTCGCATGGTTTCAGAAGGATACAGCGTTGTGATGAACGCTTTTCCAGAAAACACTGTGCAATCAATTCATGAACGCATATATGAAATGAAGAGAATTCCTCTTTTCGAACAGAGGTTGATTTTCAAAGGTAAACAACTTCAGTGGGAGCAAACTCTGGCTGAGTGTGGTATACAGAAGGATGTGATTCTTGAACTAGTTGGTCGAATGCGGAGTACGGAACATCCTCAAGCGTGGCAAGTTGTGAATGATATGGTTACTATTGCTTATGATCTTTGTCTTGGTGAGAATGTTCAGGATCCTGTTAAAACTGTGAAGAATTTACTCACTACTTACATTAATCTGGCTTTGGCACCAAAACCCAAACTTGATTCTGATTCTGCTACTAAGTATTTTCAGATTTTCACAAATTGTTCGGCGATTTCGATTCTTGTTACTCTCTATGTTTCGCCTTTTACAGGTAACAAGTCCTGCTCTGATACTTGTATTAGGCATTTTTTGAATTGTTGTAAGACTACATTGTCCGAGACATTTCATACTCAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGGAGAGTAGGGATTCATGATCCTTTGTATCTCTATTGTCGGAATTGTTTGGGGTTTTTCTTGGAAGCTTCTGACATTACACTGGCTTCTTCTGAGGATCAGAATGACAAAGGTTCCGTGTTGGTTCAAGATTTATTCCCCTTTGTTCGCGAACTTGCTGATAGTTTGTTGATGGATTTGGATATGAGCATTGATACACCTTCCTTTGCTTGTCCTGTGACGAGCAATGTTGGTGATTTTGCTGCCTTTTTAGTCCCTGTGAGGAATGGAATCAAGCAGCAGAAGTCTAACCGTGGTTTTGTACCTTACCACAAGCTCGGCAGGAACAGCTTGGTTCTTAAAGAGATTGAATACCTTTTTCTGTTGTACGATCAATTGTTGTGCAAAATTGAAATTTGCCTTCAAAAAATGGATAAGAGATTCGTTAACAAGGAAATGTCTCATGAGGAGAATTATTTTCATCCTGCATGCTCTCTCTATCTTTCCGTTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGATGGTGCTTCAGAAAAGCTCCAGGGCGTTTTGACGCGTCAAAAGGCTGTGCTGTGTCAGCTGCTCGTTAAATATGCAAAGAGGAGCGACGAGCATCAGTGGATTCTCGAGCACAAGAATGTCACCAATTTCGAGGCTAGGAGGCATTTGGCCATGATGATGTTCCCGGAGGTTAAGGAAGACTATGAAGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTTGAATACGTTGCACGGGCTGAGCCCGAGTCACTGCGTGCTGGCCTCTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCCGGTGTGCTGAGGGAGTGGTTCCTTTTGGTTTGTCAAGCAATATTCAATCAGGAAAATGCTCTTTTTGTTTCCTGCCCAAATGATCAAACGAGATTTCTCCCTAATTCTGCTTCCAAGGTGCATCCTCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATGGGGTGCAAGTAGGTATTGTTTTTGATCGGGTGTTTTTCTTGCAATTGGCTGGAAAGTCTATTTGTGTTGAAGATATAAGGGATGCAGATCCTGAGCTTTATAGAAGCTGCAAGCAGATATTAGACATGGATTCTGATCTAGTTGATTCAGATGCGTTAGGACTGACGTTTGTTAGAGAAGTGGATGAATTAGGACACAGGAAAGCGATTGAGCTCTGTCCCGGTGGAAAAGATGTTGTTGTTACTAGTAAGAACAGGGCGAAGTATATTTATCTTCTTATACAGAACCGCTTTGTAACATCCATAGCTCAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGATATTCTTTCAAGTACAAACCTCCAGACGTCCTTCTTTCAAGGTTTAGATCCGGAAGATCTTGATTGGATGCTGCGTGGGTGCAAAGATGCCATTTCCGTCGAAGATTGGAAAAAACACACTGAGTATAATGGTTATAAAGAGACTGATATTCAAATATCTTGGTTCTGGGAGGTGTTTTACCACAAGAAAATAGGGAAAATCTCCTTGATTACAACTCTGCAGAATTTTATGACTCTGTAA 2412 0.4187 MTPIETPIQQQRLSSKRKLDDDDESVLDDDLVYVRMRKEETTETTVKPWSGGGCRGGGGSGDGLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPLFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIAYDLCLGENVQDPVKTVKNLLTTYINLALAPKPKLDSDSATKYFQIFTNCSAISILVTLYVSPFTGNKSCSDTCIRHFLNCCKTTLSETFHTQAARVALEFCKLLRRVGIHDPLYLYCRNCLGFFLEASDITLASSEDQNDKGSVLVQDLFPFVRELADSLLMDLDMSIDTPSFACPVTSNVGDFAAFLVPVRNGIKQQKSNRGFVPYHKLGRNSLVLKEIEYLFLLYDQLLCKIEICLQKMDKRFVNKEMSHEENYFHPACSLYLSVLKELHKISKLYDGASEKLQGVLTRQKAVLCQLLVKYAKRSDEHQWILEHKNVTNFEARRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYVARAEPESLRAGLFMEFKNEEATGPGVLREWFLLVCQAIFNQENALFVSCPNDQTRFLPNSASKVHPLHLEYFSFCGRVIALALMHGVQVGIVFDRVFFLQLAGKSICVEDIRDADPELYRSCKQILDMDSDLVDSDALGLTFVREVDELGHRKAIELCPGGKDVVVTSKNRAKYIYLLIQNRFVTSIAQQVSHFAKGFADILSSTNLQTSFFQGLDPEDLDWMLRGCKDAISVEDWKKHTEYNGYKETDIQISWFWEVFYHKKIGKISLITTLQNFMTL* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0116 803 SMART ubq_7 71 143 IPR000626 GO:0005515
Psa4g0116 803 SUPERFAMILY Hect, E3 ligase catalytic domain 503 784 IPR035983 GO:0004842
Psa4g0116 803 SUPERFAMILY Ubiquitin-like 73 159 IPR029071 -
Psa4g0116 803 SMART hect_3 526 803 IPR000569 GO:0004842
Psa4g0116 803 ProSiteProfiles Ubiquitin domain profile. 71 147 IPR000626 GO:0005515
Psa4g0116 803 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 71 783 - -
Psa4g0116 803 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 71 783 - -
Psa4g0116 803 Pfam Ubiquitin family 74 145 IPR000626 GO:0005515
Psa4g0116 803 Pfam HECT-domain (ubiquitin-transferase) 557 783 IPR000569 GO:0004842
Psa4g0116 803 ProSiteProfiles HECT domain profile. 528 783 IPR000569 GO:0004842
Psa4g0116 803 Gene3D Hect, E3 ligase catalytic domain 752 789 - -
Psa4g0116 803 MobiDBLite consensus disorder prediction 1 21 - -
Psa4g0116 803 Gene3D Hect, E3 ligase catalytic domain 628 710 - -
Psa4g0116 803 PRINTS Ubiquitin signature 82 102 IPR019956 -
Psa4g0116 803 PRINTS Ubiquitin signature 103 123 IPR019956 -
Psa4g0116 803 PRINTS Ubiquitin signature 124 145 IPR019956 -
Psa4g0116 803 Gene3D Hect, E3 ligase catalytic domains 508 750 - -
Psa4g0116 803 Gene3D - 66 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0116 Psa-Chr4 5203878 5212109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0116 73 146 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 35.135 7.52e-08 50.8